Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01411 ATGGAGAGGAAAAGTGGAAAAGCTGTAGATGTTCTAGATGGTTCTAATATTATGGAGTTAGTTGGAAACAAAGATGTTTTCAGCAAATTCGTGAACCATAAGTTTCAAGAGCTGGATAGAGATAGAGATGGTAAACTTTCTGTGAATGAACTGAAACCTGCTGTTTCTGATATCGGTGCTGCTCTTGGTTTACCTCCTAAAGGCAATAATCCTGATTCTGATCACATCTATTCTGAGGTTTTGAATGAATTCACACATGGAAAGCATGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTTTCAGACATTCTATTGGGCATGGCTGCTGGACTCAAACGAGACCCGATTGTGATACTTCGCATTGATGGCGAAGATCTTCTCGAGTTTCTTAATGGTTCAGTTTATGAACCTGAAGTTGTATCTATATTCTCTCAAATTGAATCACCTCATGTATCTCTTCATGATCTTATAATTCAAGCTCTCGGCAAACTCAATGTTGATCAAGGGATTCCTCCTACTTCTGATCCTTGGGTTATTAACAACATTGTGGAACCAGCACTAGCACTGCTTTCTGAACATGGATCTTATTTGAATAAGCCAGTTTCTCAAGAGATATTTATGGAAGAATTTAAGAAAGTGGCATTGCTCGTAGCTAATCGTCTTCGAGAGCAACCTGTCATAGTTGCTCATAGTGAAAGCAAATTTGATGGAAGTGGTGTTAAGAGACTGTTATCAAATAAGTTTGAATTAGACAAGATTTTGAGCTCAGCTATAGAGACTCTCCCTAAGGATCGTAGCGGAAAAATGTCAAAGGATTATCTTCGAGTGGCACTGGACGTGGTTGCTCCGTCCGCTGGTTTACCTCCATTTGGTGCAGTTGAAGAGATGGATAAGGTTATCGGTGAAGTGTTTAAGATGGTGAGTGCAGACGATGCGAAGTTGGTGAAAGAAGATGAGTTCAAGAAAATATTAACTGAAATATTGGGGAGTCTGATGTTGCAGTTGGAAGGAAATCATATATCAGTTTCTTCAAATTCTGTAGTGCATGAGCCTCTGGGTTCATCTTCTACACTTCTGCAGCCATCCCCTACTACTGAAACAAAAGTATAG 1113 0.3962 MERKSGKAVDVLDGSNIMELVGNKDVFSKFVNHKFQELDRDRDGKLSVNELKPAVSDIGAALGLPPKGNNPDSDHIYSEVLNEFTHGKHEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFLNGSVYEPEVVSIFSQIESPHVSLHDLIIQALGKLNVDQGIPPTSDPWVINNIVEPALALLSEHGSYLNKPVSQEIFMEEFKKVALLVANRLREQPVIVAHSESKFDGSGVKRLLSNKFELDKILSSAIETLPKDRSGKMSKDYLRVALDVVAPSAGLPPFGAVEEMDKVIGEVFKMVSADDAKLVKEDEFKKILTEILGSLMLQLEGNHISVSSNSVVHEPLGSSSTLLQPSPTTETKV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01411 370 ProSiteProfiles EF-hand calcium-binding domain profile. 26 61 IPR002048 GO:0005509
Vifa6g01411 370 SUPERFAMILY EF-hand 33 340 IPR011992 -
Vifa6g01411 370 Gene3D - 31 329 - -
Vifa6g01411 370 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 9 120 - -
Vifa6g01411 370 Pfam EF-hand domain pair 33 100 IPR002048 GO:0005509
Vifa6g01411 370 ProSitePatterns EF-hand calcium-binding domain. 39 51 IPR018247 -
Vifa6g01411 370 SMART efh_1 300 328 IPR002048 GO:0005509
Vifa6g01411 370 SMART efh_1 30 58 IPR002048 GO:0005509
Vifa6g01411 370 SMART efh_1 254 282 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01411 Vifa-Chr6 515589556 515596882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01411 11 369 EF-hand Containing Proteins AT4G38810 66.389 1.04e-168 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01411 - - gmx:100820516 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01411 6 515589556 515596882 Vifa6g01411 6 515589556 515596882 ECH