Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01409 ATGAACCTCGTACTTGGTTTGTTCGGTTTCTGTTCAATCTTGTTTCTTGTTGCTGCTGAAGACCCTTATAGATTCTTTGACTGGAATGTTACATATGGTGACATTTATCCTCTCGGTGTTAAACAACAGGGTATTCTCATCAATGGTCAATTTCCAGGACCTGAAATTTACGCTGTAACCAATGATAATTTGATCATCAATGTACATAATAGCTTACCCGAGCCATTTCTTCTCTCATGGAATGGTGTTCAACAAAGAAGAAACTCTTTTCAAGATGGAGTTTATGGCACAACATGTCCCATTCCTCCCGCTGATGATTTCACACTCCTCATCGGTGATTGGTACAAACTTGATCACACGATACTCAAGAGATTTCTTGACTTGGGACACAGACTTCCACTCCCTCAAGCTGTTCTTATCAACGGTCGAGCGAATTGGACAACATTTACAGTTGAACAAGGAAAAACGTATCGCCTTAGAATATCGAATGTTGGATTAGAAAACACACTCAACTTTAGGATTCAAGACCATACTATGAAATTGGTTGAAGTGGAGGGAACTCACACTTTGCAAACATCCTATTCATCTATCGATGTTCATGTTGGACAATCTTACTCCGTGCTTATCACAGCTGATCAAGCACCTAAGGATTTCCACATTGTTGTATCCACTCGATTCACCGAAAAGATCCTTACAAGTACTGCAGTACTTCACTACAGTAACTCACAAGGATCTCTTTCGGACGTCATTCCTGATGGACCAACCGAGATCGATTGGTCCATCCAACAAGCGCGATCAATCAGGACGAATCTTACTGCGAGTGGACCAAGGCCAAATCCACAAGGTTCATACCACTATGGTACAATAAACATTAGTAGAACAATCAAGCTAGTGAGCTCAGCTGCACTTGTGAATGGTAAGCAAAGATACGCGGTCAACGGTGTATCTTTCGTACCGGCCGACACTCCTCTGAAGTTAGCTGATTACTTCAAGATTGACGGAGTTTTCCATGTTGGAAGCATCCCCGATAGCCCTTCCGGTAAATCAACTCATCTTGATACTTCAGTCATGGGTGCTGATTTTCGAGCCTTCGTTGAAATCGTGTTTCAAAATCGGGAAAATATAGTCCAAAGTTGGCACATTGATGGATACTCATTTTGGGTTGTAGGAATGGACGGTGGTATGTGGACGCCTAATAGTCGAAAGCAATACAACCTCCAAGATGCTGTGTCTAGGAGCACAACACAGGTATATCCTAGGTCATGGACTGCAATTTACATGGCACTAGACAATGTGGGAATGTGGAACATTAGGAGTGAATTTTGGGCACGACAATATCTTGGACAACAATTCTATATGAGGGTATATTCAGATGCTGGATCCCTTAGGGATGAATATCTAATTCCAGAAAATGCACTTCTTTGTGGCAAAGCATTGAGTAGAAAAACTACACCATTATGA 1461 0.4175 MNLVLGLFGFCSILFLVAAEDPYRFFDWNVTYGDIYPLGVKQQGILINGQFPGPEIYAVTNDNLIINVHNSLPEPFLLSWNGVQQRRNSFQDGVYGTTCPIPPADDFTLLIGDWYKLDHTILKRFLDLGHRLPLPQAVLINGRANWTTFTVEQGKTYRLRISNVGLENTLNFRIQDHTMKLVEVEGTHTLQTSYSSIDVHVGQSYSVLITADQAPKDFHIVVSTRFTEKILTSTAVLHYSNSQGSLSDVIPDGPTEIDWSIQQARSIRTNLTASGPRPNPQGSYHYGTINISRTIKLVSSAALVNGKQRYAVNGVSFVPADTPLKLADYFKIDGVFHVGSIPDSPSGKSTHLDTSVMGADFRAFVEIVFQNRENIVQSWHIDGYSFWVVGMDGGMWTPNSRKQYNLQDAVSRSTTQVYPRSWTAIYMALDNVGMWNIRSEFWARQYLGQQFYMRVYSDAGSLRDEYLIPENALLCGKALSRKTTPL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01409 486 SUPERFAMILY Cupredoxins 18 108 IPR008972 -
Vifa6g01409 486 Pfam Multicopper oxidase 106 241 IPR001117 -
Vifa6g01409 486 SUPERFAMILY Cupredoxins 289 477 IPR008972 -
Vifa6g01409 486 FunFam Monocopper oxidase-like protein 288 485 - -
Vifa6g01409 486 FunFam Monocopper oxidase-like protein 104 276 - -
Vifa6g01409 486 PANTHER MULTI-COPPER OXIDASE 42 108 IPR045087 -
Vifa6g01409 486 SUPERFAMILY Cupredoxins 100 278 IPR008972 -
Vifa6g01409 486 Gene3D - 15 107 IPR008972 -
Vifa6g01409 486 Gene3D - 108 277 IPR008972 -
Vifa6g01409 486 Pfam Multicopper oxidase 322 458 IPR011706 GO:0005507|GO:0016491
Vifa6g01409 486 CDD CuRO_3_AAO_like_1 319 440 IPR034275 GO:0005507
Vifa6g01409 486 Gene3D - 287 483 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01409 Vifa-Chr6 514436376 514439807 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01409 - - gmx:100818914 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01409 6 514436376 514439807 Vifa6g01409 6 514436376 514439807 ECH