Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01397 ATGAGAAAAGGTTTCAGTTTGTTCATTTCTCTTTGTAGCCGTAACCATCTATTGCCTCCGCCGCAACCCTCACTCCACTCTCCCTCTCGCGGCGTCTTCTTATTCTCTAGATCTCATCTCTCCACCGCCTCCGCCGCCATGCCAGGAGCTGACTCACTAGACATCGAATGGCCGGCCAAGCGCGTGAGAGACACCTTCGTGAAGTTCTTCGAAGATAAGAACCATGTCTATTGGAAGTCCAGTCCCGTCGTCCCCTTCAATGATCCTACTCTCCTCTTCGCTAACGCCGGGATGAACCAATACAAGCCAATTTTTTTGGGGACTGTTGATCCTAACACTGCCTTGAGCAAACTCTCTCGTGCGTGCAATACCCAGAAGTGTATTCGAGCTGGTGGTAAGCATAATGATCTTGACGATGTGGGGAAAGACACTTACCATCACACTTTCTTTGAGATGTTGGGAAATTGGTCGTTTGGTGACTACTTTAAAGAAGAAGCCATTAGCTGGGCATGGGAACTTCTAACCAAAGTTTATAAATTACCTTCAGATCGCATTTATGCAACCTATTTTGGTGGTGATGAGAAGGCTGGTCTTGCTCCTGATCTTGAGGCTAGAGATATATGGTTAAAGTTTTTGCCTCCTGGACGGGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGACACTGGTCCTTGTGGACCTTGCACTGAAATACATTTTGACAGAATAGGTAACCGTAATGCTGCGGATTTGGTTAATAATGATGATCCTACTTGCATTGAGATATGGAATCTCGTCTTCATCCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAATCCCTGCCTGCAAAGCATGTTGACACTGGGATGGGTTTTGAACGATTGACTTCTATTCTACAGAACAAAATGAGCAATTATGACACTGATGTCTTCGTGCCTATTTTCGACGCGATTCAGCTGGCAACTGGTGCTCACCCGTATTCCGGGAAAGTTGGACCTGAGGATGCCGATAAAATAGACATGGCATACAGGGTTGTTGCAGATCACATTAGGACTCTGTCATTTGCCATTGCTGACGGGTCCCGTCCTGGTAATGAAGGTCGCGAGTATGTTCTGAGGCGTATACTTCGTCGAGCTGTTCGGTATGGGCGTGAAGTGCTAAAAGCTGAAGAGGGTTTTTTCAATGGGCTTGTAAATGTTGTGGCAAATGTACTGGGTGATGTTTTCCCTGAGCTAAAACAACAGGAAGTGCACATTAGAAATGTGATTCAAGAGGAAGAGGAAAGTTTCGGAAGAACCTTAGTTAAGGGCATTGCAAAATTTAAGACAGCTGTTCAACACGTCCAGGGAAACATACTGAGCGGGGAGGTAGCATTTGAGTTGTGGGATACATTCGGGTTCCCGTTAGATCTGACACAGCTTATGGCTGAAGAGAAAAAATTACAAGTGGATGTCGAAGGTTTTAATAGTGCTATGGAAGCTGCAAGAGAAAGATCAAGAAGTGCTCAAAATAAGCAAGCTGGTGGTGCTATTGTCATGGATGCTGATGCCACATCAGCGTTGCACAAGAGAAGCATTGCTCCAACAGATGACAGTTTCAAATTTGTTTGGTTCAAGGACCATGAAAGTGTGGTAAAAGCAATATATACCGGTTCTGAGTTTGTTGATTCTGTTAATACTGATGGTGATGTTGGTGTGATTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTCGATACTGGGTCACTTGATTTCCAACACGCTTTATATCAAGTTCATAATGTTCAAGTTTACGGAGGTTACGTGCTTCACATCGGTAATGGGTCTGGTATCTCTGTTGGAGACAAAGTAGTATGCAAGGTTGATTACGGAAGACGTTCGCTTATAGCCCCTAATCATACATGCACACACATGTTAAATTTTGCTCTTAGGGAAGTACTTGGCAATCATGTAGACCAGAAAGGATCTATTGTTCTTCCTGAAAAATTGAGATATGATTTTTCTCACGGCAAGCCTGTCGATGCTGATTCTTTAAGGAGAATCGAGTCAATTGTTAACGAGCAAATTAAAGCTGAATTGGATGTAAATGCAAAGGAGGTAACTCTTGCCGAAGCCAAGCGCATTAATGGTCTACGAGCTGTTTTTGGAGAAGTCTATCCTGATCCTGTTAGAGTTGTCTCAGTTGGACAAAAAGTTGAAGATCTGCTTGCTGACCCTGAGAACGAAAAATGGTTATCTATTTCATCTGAATTGTGTGGCGGTACCCATATTTCAAATACAAGAGAGGCTAAAGCTTTTGCGCTTTTAGCTGAGGAGGGAATTGCTAAAGGAATCCGTAGAATAACAGCTGTCACAACTAATCGTGCTTCTGATGCAATGAAACTGGCAGATGAATTCGAACAGCAAGTAGATGAAGCGGCTAAGCTGGAAGGAAGTTTTCTGGAAGAGAAAGTTTCAGCTCTGAAAAGCAGCGTGGAAACATTATCAATTCCTGCAGCTAAGAAAGCTGAAATCAAGACCAAGATTGCACTACTTCAGGATCAAGTGAGAAAAGCGCAAAAGCGTGTTGCTGAAGAAAACAAGCGTAAAGCTGTATTATTAACAGCTGAAAAGGCTGATCTAGCTGTTTCAGATGGGAAATCGTTTTGCATTTCTCATGTTAATGTTGGCCTGGATGTTGCAGCAGTTCGTGAGGCTGTTACCAAAGTCATTGATCAGAAGGGGTTGTCAGTGATGGTTTTTAGCACTGATGAATCTACAAATAAGGCTGTAGTTTGTGCTGGGGTGCCGGAGAAAGGAGATAAAGGTAAGCTGGATGTATCAGAGTGGCTGACTAACGCTTTGGGGCCACTGAAAGGGAGATGTGGTAAAGGAAAGGGAGGTCTTGCAACAGGGCAGGGCACCGATGCAGCACACGTAAACGAGGCTATGGATCTTGCAGTGAAATTTGCATCCGTGAAATTGATTTAA 2991 0.439 MRKGFSLFISLCSRNHLLPPPQPSLHSPSRGVFLFSRSHLSTASAAMPGADSLDIEWPAKRVRDTFVKFFEDKNHVYWKSSPVVPFNDPTLLFANAGMNQYKPIFLGTVDPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISWAWELLTKVYKLPSDRIYATYFGGDEKAGLAPDLEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRNAADLVNNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNKMSNYDTDVFVPIFDAIQLATGAHPYSGKVGPEDADKIDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAEEGFFNGLVNVVANVLGDVFPELKQQEVHIRNVIQEEEESFGRTLVKGIAKFKTAVQHVQGNILSGEVAFELWDTFGFPLDLTQLMAEEKKLQVDVEGFNSAMEAARERSRSAQNKQAGGAIVMDADATSALHKRSIAPTDDSFKFVWFKDHESVVKAIYTGSEFVDSVNTDGDVGVILESTSFYAEQGGQIFDTGSLDFQHALYQVHNVQVYGGYVLHIGNGSGISVGDKVVCKVDYGRRSLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRYDFSHGKPVDADSLRRIESIVNEQIKAELDVNAKEVTLAEAKRINGLRAVFGEVYPDPVRVVSVGQKVEDLLADPENEKWLSISSELCGGTHISNTREAKAFALLAEEGIAKGIRRITAVTTNRASDAMKLADEFEQQVDEAAKLEGSFLEEKVSALKSSVETLSIPAAKKAEIKTKIALLQDQVRKAQKRVAEENKRKAVLLTAEKADLAVSDGKSFCISHVNVGLDVAAVREAVTKVIDQKGLSVMVFSTDESTNKAVVCAGVPEKGDKGKLDVSEWLTNALGPLKGRCGKGKGGLATGQGTDAAHVNEAMDLAVKFASVKLI 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01397 996 PANTHER ALANYL-TRNA SYNTHETASE 52 991 - -
Vifa6g01397 996 Gene3D - 538 628 - -
Vifa6g01397 996 Gene3D - 884 991 - -
Vifa6g01397 996 Coils Coil 796 816 - -
Vifa6g01397 996 Coils Coil 842 869 - -
Vifa6g01397 996 SUPERFAMILY Translation proteins 556 628 IPR009000 -
Vifa6g01397 996 Coils Coil 488 508 - -
Vifa6g01397 996 Gene3D Bira Bifunctional Protein; Domain 2 58 306 IPR045864 -
Vifa6g01397 996 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 310 511 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vifa6g01397 996 SUPERFAMILY Class II aaRS and biotin synthetases 59 309 IPR045864 -
Vifa6g01397 996 PRINTS Alanyl-tRNA synthetase signature 347 363 IPR002318 GO:0000166|GO:0005737
Vifa6g01397 996 PRINTS Alanyl-tRNA synthetase signature 290 303 IPR002318 GO:0000166|GO:0005737
Vifa6g01397 996 PRINTS Alanyl-tRNA synthetase signature 263 274 IPR002318 GO:0000166|GO:0005737
Vifa6g01397 996 PRINTS Alanyl-tRNA synthetase signature 135 146 IPR002318 GO:0000166|GO:0005737
Vifa6g01397 996 PRINTS Alanyl-tRNA synthetase signature 371 384 IPR002318 GO:0000166|GO:0005737
Vifa6g01397 996 FunFam Alanine--tRNA ligase, cytoplasmic 56 306 - -
Vifa6g01397 996 Pfam DHHA1 domain 855 990 IPR003156 GO:0003676
Vifa6g01397 996 CDD AlaRS_core 59 305 - -
Vifa6g01397 996 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 730 788 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vifa6g01397 996 FunFam Alanine--tRNA ligase 531 627 - -
Vifa6g01397 996 Gene3D - 629 805 - -
Vifa6g01397 996 FunFam Alanine--tRNA ligase, cytoplasmic 629 804 - -
Vifa6g01397 996 Hamap Alanine--tRNA ligase [alaS]. 57 995 IPR023033 GO:0004813
Vifa6g01397 996 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 57 802 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vifa6g01397 996 SMART tRNA_SAD_4 730 789 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vifa6g01397 996 Pfam tRNA synthetases class II (A) 62 630 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vifa6g01397 996 NCBIfam alanine--tRNA ligase 62 973 IPR002318 GO:0000166|GO:0005737
Vifa6g01397 996 FunFam Alanine--tRNA ligase 884 991 - -
Vifa6g01397 996 SUPERFAMILY ThrRS/AlaRS common domain 628 807 IPR018163 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01397 Vifa-Chr6 509511587 509527629 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01397 K01872 - gmx:100788271 1666.74