Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01371 ATGGCTTCAGTTGTACCCATTCTCCATAGTCTCCTCAACCAAAACTCAAACCTCCCATCTCTCTCCCATTCTCAACCTCTTTTCTCAAGATCCACCAACCACAAATCCAAATTCCTCAATCTCTCAAGAAAACCTAATAATCCACCAATATTGCTTCTCAAATGCTCTTCTTCCTCTTCCATGCTAAACAAACTAGAAGAAGAAGAAGAAGATGGAGAAGAAGACGGCATAAGAGAAGAAGAATTATCACCACCACCACCACCACCACCACCTCCGTTGAGCGATGTATGGGAAGAAATCCAAGGTAAGAACAACTGGGAAGGTTTGATAGATCCAATGGATCCTATCCTACGGAAAGAAACCATTCGCTACGGTGAGTTTGCTCAAGCATGCTACGATTCCTTCGACTTTGATCCACACTCAAAGTACTGTGGAACCTGCAAGTATCATCCTTCGCATTTCTTCGATAAACTAGACATGGCTGAGAGTAGTGGATACACCATAACACGTACACATGCTAACTGGATGGGATACATCGCTGTTGCCACCGATGAACAAGAAATCAAACGGTTAGGACGCCGTGACATAGTTATTGCATGGAGGGGCACAGTGACATACATAGAATGGATATACGACCTAAAAGACATTCTCCACGAAGCAAACTTCAGAAACGACCCATCAATCAAAGTAGAATTAGGCTTCTATGACTTATACACTAAGAAAGAAGATTCATGCAGTTATTGCACATTCTCAGCTCGAGAACAAGTCCTCTCAGAAATAAAACGCCTTGTACAATACTACGAAGAAGAAAAACTCAGCATCACAATCACAGGACACAGTCTCGGTGCTGCATTAGCCATACTCAGCGCCTACGACATCGCTGAACTAAAACTAAACGTCGTAGAAGACAATGTCGTCCCTGTAACCGTTTACTCGTTCGCAGGCCCTAGGGTTGGGAATTTGAAGTTTAAAGAAAGGTGTGATGCACTCGGTGTTAAGGTTTTAAGAATATTAAACGTGCATGACAAGGTTCCAACAGTTCCAGGGATAATAACTAATGAGAAGTTTCAGTTTCAAAAGTATATAGAAGATGCTTTGTCTTTTCCTTGGAGTTATGCACATGTTGGAACTGAGATTGCTTTGGATCATAGAGAAAGTCCTTTTTTGAAGGAAAATGGTGATCTAGGTTGTGCACATAATTTAGAGGTACTTTTGCATTTAATAGATGGGTATCATGGGAAGAAGAAAAAATTTGAGTTGGTTTCAAAAAGAGATATTGCACTAGTGAATAAGAGCTGTGATTTTCTACTCAGTGAGTATGGTGTACCACCTCATTGGAGGCAAGATGAAAATAAAGGGATGGTGAGAAGTGGTGATGGACGTTGGGTTTTGCCGGAACGGCCTCAATTGGAAGCTCATCCACCAGACACTGAACATCTTCTTAAGTTAGTGCTTAATTATCATATTCACGTTAATGCTAAGTTTCAATCATCATGA 1497 0.4115 MASVVPILHSLLNQNSNLPSLSHSQPLFSRSTNHKSKFLNLSRKPNNPPILLLKCSSSSSMLNKLEEEEEDGEEDGIREEELSPPPPPPPPPLSDVWEEIQGKNNWEGLIDPMDPILRKETIRYGEFAQACYDSFDFDPHSKYCGTCKYHPSHFFDKLDMAESSGYTITRTHANWMGYIAVATDEQEIKRLGRRDIVIAWRGTVTYIEWIYDLKDILHEANFRNDPSIKVELGFYDLYTKKEDSCSYCTFSAREQVLSEIKRLVQYYEEEKLSITITGHSLGAALAILSAYDIAELKLNVVEDNVVPVTVYSFAGPRVGNLKFKERCDALGVKVLRILNVHDKVPTVPGIITNEKFQFQKYIEDALSFPWSYAHVGTEIALDHRESPFLKENGDLGCAHNLEVLLHLIDGYHGKKKKFELVSKRDIALVNKSCDFLLSEYGVPPHWRQDENKGMVRSGDGRWVLPERPQLEAHPPDTEHLLKLVLNYHIHVNAKFQSS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01371 498 CDD Lipase_3 123 384 - -
Vifa6g01371 498 Pfam Lipase (class 3) 197 350 IPR002921 GO:0006629
Vifa6g01371 498 Gene3D alpha/beta hydrolase 96 476 IPR029058 -
Vifa6g01371 498 MobiDBLite consensus disorder prediction 62 95 - -
Vifa6g01371 498 SUPERFAMILY alpha/beta-Hydrolases 119 412 IPR029058 -
Vifa6g01371 498 FunFam Phospholipase A1-II 3 170 474 - -
Vifa6g01371 498 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 46 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01371 Vifa-Chr6 471494327 471497026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01371 93 485 Acyl Lipid Metabolism Gene Families AT1G51440 69.393 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01371 - - tpra:123917669 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01371 6 471494327 471497026 Vifa6g01371 6 471494327 471497026 ECH