Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01367 ATGACGACGTCGTTTGCAGCAGCGGCGCTCAGAGACCCTAAGCTTCAGATCCCAACCTACCATGGCTTACGCTCTTCCTCCGCCGCATCTTCTCTCTCTCGCAATGCTCTCTCCGTCCCTTCATCCACTCGCTCCTCCTCCCTCATACGCGCTGTTTCCACCCCTGCCAAGTCTGAAACGGTTACTGAGAAGAGGAGCAAAGTTGAGATATTCAAGGAAAATAGCAATTTCATAAGTTATCAGCAGTACAACAGAGACGAGCGTGGTTCGAGAACCTATTCGTTTATGATACGAACGAAGAATCCTTGTGGCAAGGTTTCGAATCAGCTTTACTTGACTATGGATGATCTTGCTGATCAGTTTGGAATTGGGACGCTTCGTTTGACTACTAGACAGACGTTTCAGCTGCATGGTGTTGTTAAGAAGGATCTTAAAACGGTTATGGGTTCTATTATTAGGAATATGGGCTCGAGTCTCGGTGCGTGTGGTGATCTTAATAGGAATGTGCTTGCTCCTGCTGCTCCGATTGTGAGGAATGATTATCTCTTTGCTCAAGAAACTGCAGAGAATATTGCTGCACTTTTGACTCCTCAATCTGGTTTCTATTACGATGTTTGGGTAGATGGGGAGAGATTTATGTCTGCAGAACCGCCTGAGGTAGTCCAGGCACGGAATGACAATTCTCATGGTACAAACTTCACAGATTCACCCGAGCCCATTTATGGTACTCAGTTCTTGCCCAGGAAATTCAAAATTGCAGTTACTGTGCCGACTGATAACTCTGTGGATATTCTCACAAATGATATTGGTGTTGTTGTTATTAACGGTGATGACGGGGAGCCTCAAGGATTCAACATTTACGTTGGTGGTGGGATGGGAAGAACACATAGGATGGAAAACACTTTTCCCCGCTTGGCTGAACCATTGGGTTACGTACCAAAAGAGGATATTTTGTATGCAGTGAAAGCAATTGTTGTTACACAACGAGAAAATGGGAGAAGAGATGACCGTAGGTACAGTAGAATGAAATATCTGATTGACTCTTGGGGAATAGATAAGTTCAGAAATGTAGTTGAGCAATATTATGGCAAGAAGTTCGAACCTTTCCGCAGCTTGCCAGAATGGGAATTCAAAAGTTATCTTGGATGGCATCAGCAGGGCGATGGTGGTTTATTTTGTGGGCTTCATGTTGACAATGGTCGTATTGCTGGAAAAATGAAAACGGCACTGAGAGAGGTTATTGAGAAGTATCATTTGAATGTTAGATTAACTCCAAATCAGAACATCATATTGACTGATATTCGCGCTGCATGGAAACGTCCCATCACAACCATTCTTTCTCAGGCTGGTTTGCTGCAACCTAGATATGTAGATCCGCTTAATATAACGGCTATGGCATGCCCTGCTTTCCCATTATGTCCCCTGGCAATTACTGAAGCTGAACGTGGAATACCAAGTATTCTTAAGCGGATCCGTGACATGTTTGAGAAGGTTGGTCTGAAGTATAATGAATCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATATATGGCTGAACTTGGTCTGGTTGGTGATGGCCCAAATAGCTATCAGGTTTGGCTTGGAGGCAGCAGTAACCAAACGTCAATAGCAAGGAGTTTCATGGACAAGGTGAAGCTTCAAGACCTTGAAAAAGTTTTGGAGCCATTGTTTTATCATTGGAAGCAAAAGCGTCAGTCTAAAGAATCATTTGGCGACTTCACAGTTCGACTGGGATTTGAGAAGCTTAAAGAATTTATTGACAAATGGGAGGGTCCAGTAGTAACAACAATAACACGCCACAACCTGAAACTTTTTACCAATAAAGAGACATACGAAGCATTGGATGGGTTAGCTAAGCTTCAAAACAAGAATGCTCATCAGTTGGCCATTGAAGTTATCCGCAATTATATTGCTTCCAACCAAAATGGAAAAGGTGAAACATTTAATTGA 1986 0.4325 MTTSFAAAALRDPKLQIPTYHGLRSSSAASSLSRNALSVPSSTRSSSLIRAVSTPAKSETVTEKRSKVEIFKENSNFISYQQYNRDERGSRTYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVVKKDLKTVMGSIIRNMGSSLGACGDLNRNVLAPAAPIVRNDYLFAQETAENIAALLTPQSGFYYDVWVDGERFMSAEPPEVVQARNDNSHGTNFTDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVINGDDGEPQGFNIYVGGGMGRTHRMENTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRRYSRMKYLIDSWGIDKFRNVVEQYYGKKFEPFRSLPEWEFKSYLGWHQQGDGGLFCGLHVDNGRIAGKMKTALREVIEKYHLNVRLTPNQNIILTDIRAAWKRPITTILSQAGLLQPRYVDPLNITAMACPAFPLCPLAITEAERGIPSILKRIRDMFEKVGLKYNESVVVRITGCPNGCARPYMAELGLVGDGPNSYQVWLGGSSNQTSIARSFMDKVKLQDLEKVLEPLFYHWKQKRQSKESFGDFTVRLGFEKLKEFIDKWEGPVVTTITRHNLKLFTNKETYEALDGLAKLQNKNAHQLAIEVIRNYIASNQNGKGETFN 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01367 661 FunFam Sulfite reductase [ferredoxin], chloroplastic 371 454 - -
Vifa6g01367 661 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 460 606 IPR045854 -
Vifa6g01367 661 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 79 604 IPR045169 GO:0016491|GO:0020037|GO:0051536
Vifa6g01367 661 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 163 378 IPR045854 -
Vifa6g01367 661 Pfam Nitrite and sulphite reductase 4Fe-4S domain 461 599 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vifa6g01367 661 NCBIfam sulfite reductase, ferredoxin dependent 79 601 IPR011787 GO:0020037|GO:0050311|GO:0051539
Vifa6g01367 661 Gene3D Sulfite Reductase Hemoprotein, domain 1 165 369 IPR045854 -
Vifa6g01367 661 PRINTS Sirohaem Fe-binding site signature 462 480 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vifa6g01367 661 PRINTS Sirohaem Fe-binding site signature 511 529 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vifa6g01367 661 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 511 527 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vifa6g01367 661 Pfam Nitrite and sulphite reductase 4Fe-4S domain 188 366 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vifa6g01367 661 Gene3D Sulfite Reductase Hemoprotein, domain 1 458 605 IPR045854 -
Vifa6g01367 661 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 62 162 IPR036136 GO:0016491
Vifa6g01367 661 FunFam Sulfite reductase [ferredoxin], chloroplastic 162 371 - -
Vifa6g01367 661 FunFam Sulfite reductase [ferredoxin], chloroplastic 458 608 - -
Vifa6g01367 661 Gene3D Sulfite Reductase Hemoprotein;Domain 2 370 454 - -
Vifa6g01367 661 Gene3D Sulfite Reductase Hemoprotein;Domain 2 93 164 - -
Vifa6g01367 661 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 381 453 IPR036136 GO:0016491
Vifa6g01367 661 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 92 148 IPR005117 GO:0016491
Vifa6g01367 661 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 384 437 IPR005117 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01367 K00392 - gmx:547693 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01367 6 469797759 469801690 Vifa6g01367 6 469797759 469801690 ECH