Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01349 ATGACAGAAAATCGTAAAGTTCCGAAGCTACCAGTTGAAGGAAAGCGCAACATCCTCATCACCAGTGCTCTGCCTTACGTCAACAACGTCCCTCATCTCGGCAACATCATTGGATGTGTGCTGAGTGCTGACGTGTTTGCTCGGTATTGTCGACTTAGGGGTTACAATGCTATTTACATCTGCGGTACTGATGAGTATGGCACAGCGACAGAGACTAAAGCTTTGGAAGAGAATTGTTCTCCCAAAGAGATTTGTGACAAATACCATGTCATTCATAAGGAGGTATATGATTGGTTTGATATAAGTTTTGATGAATTTGGGCGGACTTCTTCCCCTGAGCAAACTGAAGTTTGCCAGGCAATTTTCAAAAAGATACACGAAAACAATTGGCTCTCCGAGGACACATTACAACAGCTTTACTGCGATACATGCAAAAAGTTCTTAGCCGATCGGCTTGTGGAGGGTACATGCCCTATTCCCGGGTGCGAGTATGACTCTGCTCGAGGAGACCAATGTGAGAAGTGTGGAAACCTTCTAAATCCGACAGAATTGAAGATTCCCAGGTGCAAGGTTTGTCGAAATAGTCCTCGTATTTGTGATACGGACCACTTATTTCTTGAGCTCCCTCTTTTGAAAGATAAGTTGGAAAAATACATCAATGAGATGTCTGTGGCTGGATCATGGAGTCAGAATGCTATTCAAACAACAAATTCATGGTTCAAAATGGGATTAAAGAAACGTTGTATTACCAGAGATCTGAAGTGGGGAGTTCCTGTTCCACATGAAAAATACAGTGACAAGGTTTTCTACGTTTGGTTTGATGCACCTATCGGATATATATCAATCACGGCAAGCTACACAGGTGATTGGGAGAAATGGTGGAAAAATCCGGAGAATGTGGAGTTATTTCAGTTTATGGGAAAGGACAACGTGCCATTCCACACTGTAATGTTTCCATCTACTCTACTCGGGACTGATCAAAATTGGACTTTAATGAAGACTATTAGTGTTACTGAATACCTGAATTATGAAGCAGGGAAGTTTTCTAAGAGCAAAGGCATCGGGGTATTTGGTAATGATGCAAAAGATACTACTATTCCAGTTGAAGTATGGAGATATTACTTGCTCACAAATAGGCCTGAGGTATCAGATACACTTTTTACGTGGTCTGACTTGCAAGCAAAATTAAATACTGAGTTGCTGAATAACTTGGGAAACTTCGTCAACCGAGTTTTGAGTTTTATTGCCAAACCTGAAGGTCAAGGATATGATTCCATTATTCCCACTGTTCCTGATGATGTAAGTGGCGACTCCCATGATCCAACCAAAAAATTGGCCAGCAAAGTTGCTGCATATTTGGAGCAATACATAGAAGCAATGGAGAAGGTTAAACTCAAGCAAGGATTGAAAATTGCAATGAGCATATCCGGTGAGGGGAATGCATATTTGCAGGAAACTGAATTTTGGCGTCTTTACAAGCAAAACCAATCTCTCTGCTCCCTTGTTATGAAAACTGCTGCTGGGATTGTATATCTTCTTGCTTGTTTATTGGAACCTTTTATGCCATCTTTCAGTCTTGAGGTATTCAAGCAGCTAAATTTGTCCACGGAGACACATCTTTCACTTTCTGATGATAAAGGAGATGTTGATAGAGTAAGAAGGCCCTGGGATCTCCTGAGTGCTGGTCATAAAATTGGAACACCAAAGCCATTGTTCAGGGAGCTGAAAGATGAAGAAGTGGAGTTCTACAGGAAGAAATTTGAAGGAAGTCAAGCAGATAGGGTTTTGCGCGCAGAGGCCGAAGCTGCTGAAAATGTTGCTGCACAATTGAAGAAAACAAAAGTTTCAGATGGCACTGGGAAGAAAAAACCCGGGGCAAAATCAGCAGCAAAATCATCAAATGAAGCCAAAAACAAGTCTGCTGCTGAACCAGATATTTCCATCACAAGGCTTGATATTCGAGTTGGTCTCATAAAAAAGGCTGAAAAGCATCCTGATGCAGATTCACTATATGTTGAAGAGATTGATGTTGGTGAAGAACAGACAAGAACTGTTGTCAGTGGACTTGTCAAGTATATACCACTTGATGAAATGCAGAACCGAAAAGTCTGTGTTCTTTGCAACTTAAAACCAGCAAGCATGAGGGGCATTAAATCCCAAGCTATGGTTCTTGCTGCTTCCAATGATGATCACACCAAGGTTGAGTTGGTGGAACCGCCCAGTTCTGCTTCTGTTGGAGAAAGAATTACATTCCCAGGGCATGAAGGCAGTCCTGATGAACTCTTAAACCCAAAGAAGAAAGTTTGGGAGACATTGCAAGTCGATCTGCACAGTAATGAGAAGCTAGAGGCATGCTACAAAAACATTCCACTCACCACTTCAGCTGGCATTTGCACAGTTTCATCGATAAGCAATGGATCAATACGGTAG 2430 0.4177 MTENRKVPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCSPKEICDKYHVIHKEVYDWFDISFDEFGRTSSPEQTEVCQAIFKKIHENNWLSEDTLQQLYCDTCKKFLADRLVEGTCPIPGCEYDSARGDQCEKCGNLLNPTELKIPRCKVCRNSPRICDTDHLFLELPLLKDKLEKYINEMSVAGSWSQNAIQTTNSWFKMGLKKRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYISITASYTGDWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTDQNWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTTIPVEVWRYYLLTNRPEVSDTLFTWSDLQAKLNTELLNNLGNFVNRVLSFIAKPEGQGYDSIIPTVPDDVSGDSHDPTKKLASKVAAYLEQYIEAMEKVKLKQGLKIAMSISGEGNAYLQETEFWRLYKQNQSLCSLVMKTAAGIVYLLACLLEPFMPSFSLEVFKQLNLSTETHLSLSDDKGDVDRVRRPWDLLSAGHKIGTPKPLFRELKDEEVEFYRKKFEGSQADRVLRAEAEAAENVAAQLKKTKVSDGTGKKKPGAKSAAKSSNEAKNKSAAEPDISITRLDIRVGLIKKAEKHPDADSLYVEEIDVGEEQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNDDHTKVELVEPPSSASVGERITFPGHEGSPDELLNPKKKVWETLQVDLHSNEKLEACYKNIPLTTSAGICTVSSISNGSIR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01349 809 Pfam tRNA synthetases class I (M) 18 412 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa6g01349 809 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 153 189 IPR029038 -
Vifa6g01349 809 Gene3D HUPs 17 400 IPR014729 -
Vifa6g01349 809 CDD MetRS_core 17 387 IPR033911 GO:0004825|GO:0006431
Vifa6g01349 809 PANTHER METHIONINE--TRNA LIGASE 4 807 IPR023458 GO:0004825
Vifa6g01349 809 CDD tRNA_bind_EMAP-II_like 646 750 - -
Vifa6g01349 809 CDD Anticodon_Ia_Met 396 532 IPR041872 -
Vifa6g01349 809 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 25 36 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa6g01349 809 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 404 588 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa6g01349 809 ProSiteProfiles tRNA-binding domain profile. 647 750 IPR002547 GO:0000049
Vifa6g01349 809 MobiDBLite consensus disorder prediction 614 642 - -
Vifa6g01349 809 SUPERFAMILY Nucleic acid-binding proteins 647 807 IPR012340 -
Vifa6g01349 809 SUPERFAMILY Nucleotidylyl transferase 15 398 - -
Vifa6g01349 809 Pfam Anticodon binding domain of methionyl tRNA ligase 436 591 IPR041872 -
Vifa6g01349 809 Hamap Methionine--tRNA ligase [metG]. 16 586 IPR023458 GO:0004825
Vifa6g01349 809 Gene3D - 646 809 IPR012340 -
Vifa6g01349 809 PRINTS Methionyl-tRNA synthetase signature 101 112 IPR033911 GO:0004825|GO:0006431
Vifa6g01349 809 PRINTS Methionyl-tRNA synthetase signature 269 280 IPR033911 GO:0004825|GO:0006431
Vifa6g01349 809 PRINTS Methionyl-tRNA synthetase signature 20 33 IPR033911 GO:0004825|GO:0006431
Vifa6g01349 809 PRINTS Methionyl-tRNA synthetase signature 399 410 IPR033911 GO:0004825|GO:0006431
Vifa6g01349 809 PRINTS Methionyl-tRNA synthetase signature 53 67 IPR033911 GO:0004825|GO:0006431
Vifa6g01349 809 PRINTS Methionyl-tRNA synthetase signature 304 319 IPR033911 GO:0004825|GO:0006431
Vifa6g01349 809 FunFam Methionine--tRNA ligase cytoplasmic 401 574 - -
Vifa6g01349 809 NCBIfam methionine--tRNA ligase 18 539 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Vifa6g01349 809 Pfam Putative tRNA binding domain 653 747 IPR002547 GO:0000049
Vifa6g01349 809 FunFam Methionine--tRNA ligase 153 189 - -
Vifa6g01349 809 FunFam tyrosine--tRNA ligase, cytoplasmic isoform X2 646 809 - -
Vifa6g01349 809 Gene3D - 401 574 - -
Vifa6g01349 809 Gene3D - 153 189 IPR029038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01349 Vifa-Chr6 465815341 465827333 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01349 K01874 - gmx:100809861 1441.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01349 6 465815341 465827333 Vifa6g01349 6 465815341 465827333 ECH