Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01333 ATGAGTGATAATTTGAAGGAAAAAGTGAACGCTATAGGAGAGCGTCTCAAGATCAATGGAGCTGAAGTGGGTCGAAAAGTAAGCGCTGGAATGAGCAGCATGAGTTTCAAGATGAAAGAGTTTTTTCAAGAACCAAACCAAGCTGATAAACTTGTTTCAGATGCTACTTCTGAGTCACTTGATGAGCCTAACTGGGATATGATTCTGCATGTTTGTGATTTGGTCAATGCTGAAAAGGTTCAGACTTGTGAAGCTGTAAGGGCGATCAAGAAAAGGGTGATGGTGAAAAGTCCTAGAGGGCAGTATTTGGCTTTGGTTTTGCTTGAAGCGTTGGTGAAGAATTGTGATAAGGGTTTCTTTGAGGTTGCGACGGAGAGAGTGCTTGATGAAATGGTTAAGATTGTTGATGTTGATTCTGATCAGAGTTTTGTTAGTTGTAAGGATAAGGCTTTGAGGATGATTCAGTGTTGGGGTGAATCAAGTACCGAGCTTCGGTATTTGCCTGTTTATGAAGAAACTTACAAGAGTTTGAAAGCAAGGGGTGTTCGATTTCCTGGCTGTCATGATGAAAGATTGGATCATGTTTTGCCTCCTTCTGGTTCTGCCTCTGCACCCGAGGGTGGTCGAAGTCTTGAACATCTTATACAGCATGAAAATCATGTCACAAGTTACACTTCCCAACAAACAAAAGAAGCTTTTGATGTTGCAAGAAATTGCAGTGACCTTCTATCTTCTGTCTTATCTTCTTCTTCACTGCAACTAACTGTTCTCCAGCAAAATTTAACCATGACATTAGTACAACAGTGCCGTGAGTCTCAATCCACTGTCCATAGAATCATTGAAACTGTTGGGAACAATGAAGCACTACTTTTTGAAGCCCTGCAAGTAAATGATGAGATTCATAAGGTTCTGTCCAAATACGAAGAGTTGAAGAAGAAGAAGAAGCAGCCTAAAGTTTCTCCACTTAAACCAGAACCAGATACGATGATACCTGTTGCTATTGAGCCAGATGAATCGCCGCATTTTAGGGAAGATGCCTTGATTAGAAAGCCAGCTAGTTCGAGAACTGGAGTCCAAGGATTGAGCCATGATGATATGATGGATGATCTTGATGAAATGATATTTGGCAAAAAGGGTGGTGATGCATCACAATGGGAACAAGATCCTAAGAAGCAACAATCATCAAAATATGAATCCATCTCCTTATAA 1209 0.4069 MSDNLKEKVNAIGERLKINGAEVGRKVSAGMSSMSFKMKEFFQEPNQADKLVSDATSESLDEPNWDMILHVCDLVNAEKVQTCEAVRAIKKRVMVKSPRGQYLALVLLEALVKNCDKGFFEVATERVLDEMVKIVDVDSDQSFVSCKDKALRMIQCWGESSTELRYLPVYEETYKSLKARGVRFPGCHDERLDHVLPPSGSASAPEGGRSLEHLIQHENHVTSYTSQQTKEAFDVARNCSDLLSSVLSSSSLQLTVLQQNLTMTLVQQCRESQSTVHRIIETVGNNEALLFEALQVNDEIHKVLSKYEELKKKKKQPKVSPLKPEPDTMIPVAIEPDESPHFREDALIRKPASSRTGVQGLSHDDMMDDLDEMIFGKKGGDASQWEQDPKKQQSSKYESISL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01333 402 ProSiteProfiles GAT domain profile. 185 312 IPR004152 GO:0035091|GO:0043130
Vifa6g01333 402 MobiDBLite consensus disorder prediction 313 333 - -
Vifa6g01333 402 Gene3D - 39 199 IPR008942 -
Vifa6g01333 402 SMART VHS_2 48 181 IPR002014 GO:0035091|GO:0043130
Vifa6g01333 402 Pfam GAT domain 241 312 IPR004152 GO:0035091|GO:0043130
Vifa6g01333 402 SUPERFAMILY GAT-like domain 192 313 - -
Vifa6g01333 402 SUPERFAMILY ENTH/VHS domain 42 185 IPR008942 -
Vifa6g01333 402 CDD VHS 48 179 - -
Vifa6g01333 402 MobiDBLite consensus disorder prediction 347 402 - -
Vifa6g01333 402 ProSiteProfiles VHS domain profile. 55 185 IPR002014 GO:0035091|GO:0043130
Vifa6g01333 402 Pfam VHS domain 46 181 IPR002014 GO:0035091|GO:0043130
Vifa6g01333 402 Gene3D - 211 314 IPR038425 -
Vifa6g01333 402 PIRSF TOM1 32 401 IPR014645 -
Vifa6g01333 402 Coils Coil 293 313 - -
Vifa6g01333 402 PANTHER TOM1-LIKE PROTEIN 1 1 400 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vifa6g01333 402 MobiDBLite consensus disorder prediction 362 376 - -
Vifa6g01333 402 MobiDBLite consensus disorder prediction 386 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01333 Vifa-Chr6 463902321 463904093 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01333 - - zju:107414831 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01333 6 463902321 463904093 Vifa6g01333 6 463902321 463904093 ECH