Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01294 ATGATGGCTGGAAATGGTTTTTTTTATCCGTTGTTTGGTTTTGCATCGATTGTGCTTTTGATTTACATGTCATTTGGGGATGTGAAGATGGGTTTTGAGGAAGATGTTGAATTGAGTTTTGTGGAGAGAAAGGGCTCTCAGTTTGTGTTGGATGGGAAAGCTTTTTACATTAATGGGTGGAACTCTTATTGGTTTATGGTTCAATCGGTGGATTATTATACAAGACCTAGGGTCAGTGAAATGCTCAAAGCTGGGGCTAAGATGGGTTTAACTGTTTGTAGAACTTGGGCTTTTAATGATGGTGACTATAATGCCCTTCAGACTTCACCTGGTGTTTTTAATGAAGAAGCTTTCAGGGCCTTGGACTATGTCATAGCGGAAGCAAGGAGACATCGAATTAGGCTACTTCTCAGCTTAGTAAATAACTTGCAAGCATATGGTGGAAAGGATCAGTATGTGAAGTGGGCATGGCAAGACGGAGTAGGGTTAAGTTCGTCGAATGATTCTTTCTTCTATGATCCATCAATAAAAAGTTATTTCAAAACTTATGTCAAGGCTATTCTTACAAGAAAGAATACTATTACTGGAATTGAATATAGACATGATCCTATCATTTTTGGTTGGGAATTGATTAACGAACCGCGGTGTTTAACTGATCCTTCTGGTGACACTCTCCAAGAGTGGATAGAGGAGATGTCAACTTTTGTCAAATTGATTGACAAGAAACATCTGGTGACTATTGGGCTTGAAGGTTTTTATGGTCCTAATGACCCGAAAAGGTTGACTGTCAACCCACCCGAGGGATGGGCGTCTAGACTTGGATCTGATTTTATTAGGAACTCTCAAACCTCAAATATCGACTTCACCTCTGTCCATATCTATCCTGACCATTGGTTTCATAAGCAAGATTTTGAAGTCTATATGAAATTCCTCACCAAGTGGATGATTTCTCACATTGAAGATGGTGATACTGTATTAAAGAAACCTGTTTTGTTTTCTGAATATGGATTATCAGACACAATCAAGAACTTTTCATTGGCTGACCGAGAAAGGATGTACAGAACAATATTAGACATATCCCACAAATCTGCCAGGAAAAACCAGTCCGGTGCAGGTGCTTTGGTTTGGCAGTTCTTAGTCGGCGGAATGTCAGATTTGATCGATGATTTCGGAATGGTACCGTGGGAAAGGCCGTCAACCTATTCACTATTTATTCAACATTCATGCAGATTAGCTCATGTCAACAAGGGATTGACTCATCAGAACCCGAGTTTCAAACGAGTGTGTTAG 1290 0.3984 MMAGNGFFYPLFGFASIVLLIYMSFGDVKMGFEEDVELSFVERKGSQFVLDGKAFYINGWNSYWFMVQSVDYYTRPRVSEMLKAGAKMGLTVCRTWAFNDGDYNALQTSPGVFNEEAFRALDYVIAEARRHRIRLLLSLVNNLQAYGGKDQYVKWAWQDGVGLSSSNDSFFYDPSIKSYFKTYVKAILTRKNTITGIEYRHDPIIFGWELINEPRCLTDPSGDTLQEWIEEMSTFVKLIDKKHLVTIGLEGFYGPNDPKRLTVNPPEGWASRLGSDFIRNSQTSNIDFTSVHIYPDHWFHKQDFEVYMKFLTKWMISHIEDGDTVLKKPVLFSEYGLSDTIKNFSLADRERMYRTILDISHKSARKNQSGAGALVWQFLVGGMSDLIDDFGMVPWERPSTYSLFIQHSCRLAHVNKGLTHQNPSFKRVC 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01294 429 SUPERFAMILY (Trans)glycosidases 39 403 IPR017853 -
Vifa6g01294 429 PANTHER - 13 424 IPR045053 GO:0004553
Vifa6g01294 429 Pfam Cellulase (glycosyl hydrolase family 5) 68 377 IPR001547 GO:0004553|GO:0071704
Vifa6g01294 429 FunFam Mannan endo-1,4-beta-mannosidase 6 37 415 - -
Vifa6g01294 429 Gene3D Glycosidases 37 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01294 Vifa-Chr6 452123633 452126165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01294 3 414 Glycoside Hydrolase AT2G20680 66.505 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01294 K19355 - gmx:100811461 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01294 6 452123633 452126165 Vifa6g01294 6 452123633 452126165 ECH