Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01236 ATGATCGGAACTGAAAGAACAACCGCTCGTAACAGACTCAGATCCCGTTCCCCTGAACCCGATGCCGATTCTCGTGGCACAGAACCTCATCTTCCTCGCGTCGTAACGCCATTTCCCGCGCCGAAGATCATGGACCTTCCTCAGTTTCAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCCCATCTCTATCTTGGAATTCGTGCAAGGACTCCACAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAAGATGGTAGTAATCACTTGAGGCATGTCTGCAGATATGAGGATGGATTAAGTGCTTATGGTTGGACAAAGCATAATGGACGTGATTATGGGCATCAAGTATTAGTTGACCATGGCCTGATCTTGACTACCGAGTTCTTAAAATCAAATGGGGATGGCAGCGGTTATGGAGGCGACTGGGCAGTTCGAATTGGTGTGCAGATTGATAAGTCTAGGTGGAATGAGGAAGTTGGGCAAGGCGGCCAGCTCTTTTTCTATCTGGCTGATGAAGGTGGTAATGTTCTTGATGTAGGTAGAGAAAAATTGAACATTCACGAGAGTTCATTACTTGCATCTGGCTCTCGAACTGACATTGGAGACTGGCAGCTACATTTGAAGTCAACGGATGATCTGAAACTGCATTACTCTGGACTCCACACACCTCACTTCCACAATTTGTCTGATCTTGTTAAGGAAAAGCTTGCATCGCAAACAAGAAACCATGCTCAAATGCAGCTATCTGACTCATCAGATGATTCTTCAAATGTGTTAGTTTTTCAGATTGTCGGCGACTTTCCTTTCACTACAGATATTGCACTTATCTCTGGAACTGATTCAGAAAGTTCTAGTGTAGAAGAGCGTGTCAATAGTCTTACAGGAGCCTCACTGTCCAATGAACTGAAATATAAAGAACAAGCATTTGATGAAAAGATTGAGAAAACTTTCAATTTGGCTGAGAAGGTGGATTCAGAATCCGTTTCTGTTGGTAAGTATGCTGTTGGAAGCTTATTAGGTGGCATCGGCTACTTCTATGGCCAGTCAAAAATTGCTCAGTCAAGAACCCTTGATCATAGAGAACATGATGCTTACTTATCATATTGGCCTGCTGAGCTTTACACGGCTGTACCATGTCGGCCAATCTTCCCAAGAGGATTTTTATGGGATGAAGGTTTTCATCAACTTGTAATCTGGCGCTGGGATATTCATATTTCATTGGATATCATTGGACACTGGTTAGATTTGATGAACATTGATGGATGGATACCACGAGAACAAATTCTCGGGGCTGAAGCACTAAGTAAGATCCCAGAGGAATATGTTCCTCAGCATCCTACAAATGCAAATCCTCCAACTCTGTTTTTAGCATTAAGCGGCATAGTCAATAGCTTGAAGAATAACGAGTTTAATGCGATGGAAAGAAGTGAGATCTCTCTGTTCCTGGAGTGTGCTTTCAGTCGATTAGAAGCATGGTTCCAATGGCTCAATAAAACTCAGTCAGGGGAGCAAATGAGTAGCTACTATTGGCGTGGACGGGACAATGCGACAACACTTGAATTAAATTTAAATTCCCAGACGCTTTCCTCTGGATTGGATGATTATCCGAGAGCTTCTCACCCAAGTTCAGATGAACGCCATTTGGATCTTAGATGCTGGGTGTTACTTGCAGCACAATGCATGCATTCCATTGAAGAGTTGTTGAATAAGGAAACCAAACCAGAAAAGAATTATGGTTCTGCTGTGAAATTACTATCAGATCAAGAGTTATTGAACAAGATGCATTTTGATTACGCGTATGGTGCTTACTTTGATTTTGGAAATCATACGGAAGAGGTTCAACTTGAATGGAAAGAATTGAAAGCAGAAAACAGTCATGTGACTCGTCAGCTTGTTCGAGAAGTTTTAGAGAGCCCTGTGTTGAGATTGGTTCCCCATATTGGCTACGTTAATTTCTTCCCATTCATGGGGAGAATCATTCCATCTGGATCGTGGATCCTGGAGAAGCAGCTTGAACTCATTTCAAATCGCAGCCTATTATGGAGTGACTATGGACTTCGTTCTCTTTCCAAAACAAGTTCCTTGTACATGAAATACAACAATGAACATGATGCTCCATATTGGAGAGGTTCAATTTGGATAAACATGAATTACAGGGTCCTTTCAGCACTCCACCATTACTCTAAAGAGAATGGGCCATATCAGGACAAAGCTAAAGCCATGTACAAAGAATTGAGAAGCAATTTAATTAGAAATATAGTGCGAAACTATCAACAGACTGGATTTCTGTGGGAGCAGTACGATCAGATTAAAGGAAATGGAAAAGGTGCACATCCATTTACAGGTTGGACATCACTTGCTGTGTTAATAATGGCGGAAGCATACGACACAATTTAG 2412 0.4208 MIGTERTTARNRLRSRSPEPDADSRGTEPHLPRVVTPFPAPKIMDLPQFQGEHKESLYWGTYRPHLYLGIRARTPQSLMAGLMWIGVKDGSNHLRHVCRYEDGLSAYGWTKHNGRDYGHQVLVDHGLILTTEFLKSNGDGSGYGGDWAVRIGVQIDKSRWNEEVGQGGQLFFYLADEGGNVLDVGREKLNIHESSLLASGSRTDIGDWQLHLKSTDDLKLHYSGLHTPHFHNLSDLVKEKLASQTRNHAQMQLSDSSDDSSNVLVFQIVGDFPFTTDIALISGTDSESSSVEERVNSLTGASLSNELKYKEQAFDEKIEKTFNLAEKVDSESVSVGKYAVGSLLGGIGYFYGQSKIAQSRTLDHREHDAYLSYWPAELYTAVPCRPIFPRGFLWDEGFHQLVIWRWDIHISLDIIGHWLDLMNIDGWIPREQILGAEALSKIPEEYVPQHPTNANPPTLFLALSGIVNSLKNNEFNAMERSEISLFLECAFSRLEAWFQWLNKTQSGEQMSSYYWRGRDNATTLELNLNSQTLSSGLDDYPRASHPSSDERHLDLRCWVLLAAQCMHSIEELLNKETKPEKNYGSAVKLLSDQELLNKMHFDYAYGAYFDFGNHTEEVQLEWKELKAENSHVTRQLVREVLESPVLRLVPHIGYVNFFPFMGRIIPSGSWILEKQLELISNRSLLWSDYGLRSLSKTSSLYMKYNNEHDAPYWRGSIWINMNYRVLSALHHYSKENGPYQDKAKAMYKELRSNLIRNIVRNYQQTGFLWEQYDQIKGNGKGAHPFTGWTSLAVLIMAEAYDTI 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01236 803 SUPERFAMILY Six-hairpin glycosidases 308 800 IPR008928 GO:0005975
Vifa6g01236 803 FunFam mannosyl-oligosaccharide glucosidase 326 800 - -
Vifa6g01236 803 MobiDBLite consensus disorder prediction 9 28 - -
Vifa6g01236 803 FunFam Mannosyl-oligosaccharide glucosidase GCS1 44 325 - -
Vifa6g01236 803 Pfam Glycosyl hydrolase family 63 C-terminal domain 299 798 IPR031335 -
Vifa6g01236 803 Gene3D - 326 802 IPR012341 GO:0005975
Vifa6g01236 803 Pfam Glycosyl hydrolase family 63 N-terminal domain 56 229 IPR031631 -
Vifa6g01236 803 Gene3D - 44 325 IPR038518 -
Vifa6g01236 803 MobiDBLite consensus disorder prediction 1 35 - -
Vifa6g01236 803 PANTHER MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE 32 800 IPR004888 GO:0004573|GO:0009311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01236 Vifa-Chr6 404439907 404459112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01236 28 800 Glycoside Hydrolase AT1G24320 57.494 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01236 K01228 - gmx:100795691 1294.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01236 6 404439907 404459112 Vifa6g01236 6 404439907 404459112 ECH