Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01157 ATGCTTCTACTGTTTGAAACTGCCGCTGGTTTTGCACTTTTCAAAGTGCTTGATGAAGGAAAGCTTTCAAAAGTTGAGGACTTACAAGAGTCGTTTTCCAGTGCGGCTACTGCTAGAAAGGTTGTCAAATTGAAAGCATTTTCCAAATTTGAGAATACATCAGAAGCTCTAAAGTCGGCTAATTTGCTGATTGATGGAAAAGCTAGCAAGGATTTGCGCAAGTTTTTAAGTGTTCATTGCCAAAATGAAACATTGGGTGTAGCTGACACGAAGCTTGCGAGTGTCATTAAAGAAAAATTGCAAATCGACTGTGTTCACAACATTGGTGTTATGGAGTTGTTGAGAGGTGTCAGATATCAATTGACTGAACTCATAGCAGGTCTAGCTGTTCAAGACATGGCCCCCATGAGCTTGGGTTTGTCTCACAGTTTATCGAGATACAAGTTGAAGTTCAGTGCTGACAAGGTGGATACTATGATTGTCCAAGCCATTGGTTTACTTGATGATCTTGATAAAGAGCTGAACACCTATGCCATGAGAGTTCGTGAGTGGTATGGTTGGCATTTTCCAGAACTTACCAAAATCATATTGGACAATATCCAATATGCAAAAGCAGTCAAGTTGATGGGTGATCGCATCAATGCTGCCAAGCTTGATTTCTCCGAGATTTTGTCAGAGGAGGTTGAGGCAGAGGTGAAAGAAGCATCAGTAATATCTATGGGAACTGAAATTGGTGACCTTGATTTAGAAAACATTAGAGAGCTCTGTGATCAGGTTTTGTCTCTTTCAGAATACAGGGCGCAACTCTATGATTATCTCAAGAGTAGGATGAACACCATAGCACCCAATTTGACTGCTATGGTTGGGGAACTTGTTGGTGCTCGTCTTATTGCCCATGGTGGTAGCTTATTAAATCTTGCAAAGCAGCCTGGTAGTACTGTGCAGATTCTTGGTGCCGAGAAGGCTCTTTTTAGGGCACTTAAGACTAAACATGCCACTCCAAAGTATGGTCTCATTTACCATGCATCCTTGATTGGTCAGGCAGCTCCAAAGTTGAAGGGCAAAATTTCACGATCACTTGCTGCAAAGACTGCTTTGGCTATCAGGTGTGATGCACTTGGAGATGGGGAAGATAACACCATGGGATTGGAGAACAGAGCCAAGCTTGAAGCACGATTGAGGGGTCTTGAAGGCAAAGAATTAGGTCGTTTTGCTGGTTCTGCTAAAGGGAAGCCCAAGATTGAAGCATATGACAAGGATAGAAAGAATGGAGGACTGATAACACCTGCTAAGACATATAATACTGCAGCTGATTCAGTTATTGAACCCAAGTCTAATTCTGCAATGGATGAAGATACCCAAGAGACTCCTGTCGCTGACAAAAAGAAGGAAAAAAAGGCAAAGAAGGAAAAGAAAGAAAAGAAGAAAAAGGAGAAAAAAGAAGAGAAGATTGAAGTTGTTGAGGAACCCGAACAGGAAGTTGTGAAAAAAGAAAAGAAGAAGAAAAATAAGGAATCTTCAGAGAAAGCCGAGTCGCAGAATGGTGACAATAATTTGAATGGAGGAGAAAAGAAGAAAAAAAGAAAGAAGAGTGCAGAAGAGGAAGACACAGTTGATATGCCGAGCAAAAAGAAAGAAAAAAAGAAGAAAGACGATTAG 1659 0.4105 MLLLFETAAGFALFKVLDEGKLSKVEDLQESFSSAATARKVVKLKAFSKFENTSEALKSANLLIDGKASKDLRKFLSVHCQNETLGVADTKLASVIKEKLQIDCVHNIGVMELLRGVRYQLTELIAGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIILDNIQYAKAVKLMGDRINAAKLDFSEILSEEVEAEVKEASVISMGTEIGDLDLENIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKLKGKISRSLAAKTALAIRCDALGDGEDNTMGLENRAKLEARLRGLEGKELGRFAGSAKGKPKIEAYDKDRKNGGLITPAKTYNTAADSVIEPKSNSAMDEDTQETPVADKKKEKKAKKEKKEKKKKEKKEEKIEVVEEPEQEVVKKEKKKKNKESSEKAESQNGDNNLNGGEKKKKRKKSAEEEDTVDMPSKKKEKKKKDD 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01157 552 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Vifa6g01157 552 MobiDBLite consensus disorder prediction 475 511 - -
Vifa6g01157 552 FunFam Nucleolar protein 58 284 405 - -
Vifa6g01157 552 FunFam Probable Nucleolar protein 58 129 283 - -
Vifa6g01157 552 Gene3D Nop domain 285 397 IPR042239 -
Vifa6g01157 552 SMART NOSIC_2 159 211 IPR012976 -
Vifa6g01157 552 SUPERFAMILY Nop domain 153 396 IPR036070 -
Vifa6g01157 552 MobiDBLite consensus disorder prediction 520 552 - -
Vifa6g01157 552 Coils Coil 458 489 - -
Vifa6g01157 552 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Vifa6g01157 552 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 550 IPR045056 GO:0030515|GO:0031428|GO:0032040
Vifa6g01157 552 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Vifa6g01157 552 MobiDBLite consensus disorder prediction 407 552 - -
Vifa6g01157 552 Gene3D - 129 284 - -
Vifa6g01157 552 MobiDBLite consensus disorder prediction 428 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01157 Vifa-Chr6 374371057 374374703 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01157 K14565 - gmx:100775301 784.637