Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01146 ATGTTAACGAAGTTCGAGACGAAAAGTAACAGAGTGAAGGGATTGAGTTTCCATAGCAAAAGGCCATGGATACTTGCGAGTCTTCACAGTGGCGTGATCCAGCTATGGGACTATCGAATGGGGACTTTGATTGATAGATTCGATGAGCATGATGGACCTGTTAGAGGCGTTCATTTTCACAATTCTCAGCCCCTCTTTGTATCTGGAGGGGATGATTACAAGATTAAAGTCTGGAACTATAAGATGCATAGGTGTTTGTTCACTCTTCTAGGACACCTTGATTATATTCGGACAGTTCAATTTCATCATGAGAACCCATGGATTGTGAGTGCCAGTGATGATCAAACCATTCGCATCTGGAACTGGCAGTCACGTACCTGTATATCTGTTTTAACTGGGCACAACCATTATGTTATGTGTGCTTCATTCCATCCAAAAGAGGATATTGTTGTATCAGCCTCCTTGGATCAGACTGTTCGTGTTTGGGATATAGGTTCCCTCAAAAGGAAGGCTGGACCTCCTTCAGATGATATTTTACGATTGAGTCAGATGAACACAGATCTTTTTGGTGGCGTCGATGCAGTTGTTAAGTATGTGTTAGAAGGCCATGACCGAGGTGTCAACTGGGCTGCTTTTCATCCTACACTGCCTCTTATTGTCTCAGGAGCTGATGACCGTCAAGTGAAACTTTGGAGGATGAATGACACTAAGGCATGGGAAGTGGATACTCTGAGAGGGCACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAACAGGACATCATTGTGTCAAATTCTGAGGATAAAAGTATCAGAGTATGGGATGCAACAAAGAGGACTGGTATTCAAACTTTCCGCAGGGAACATGATCGATTTTGGATTCTTTCAACGCATCCTGAAATGAATCTGTTGGCAGCTGGTCATGACAGTGGCATGATAGTCTTCAAGCTGGAGAGAGAAAGGCCCGCCTTCGCTGTTAGTGGTGATTCTTTGTTTTACACGAAAGACCGCTTTTTGCGGTTCTATGAATTTTCAACACAGAGAGAGACACAAGTACTTACTATTCGGCGACCTGGTTCTTTAAGCCTGAATCAAAGTCCTAAGACTCTTTCCTACAGTCCTACTGAAAATGCAATCCTTCTCTGTTCAGATGTGGATGGTGGATCTTATGAGTTGTACTGCATATCCAAAGATAGCACAATTAAAGACAGTTTTGGTAGGGGCGATATGCAAGAACCAAAGAAGGGTCTTGGAGGATCAGCAGTCTTTGTGGCTCGGAATAGGTTTGCTGTGCTTGAAAAAAGCAGCAACCAAGTCCTTTTAAAAAACCTGAAAAATGAGCTTGTTAAAAAGAGTGTGCTTCCGATTGCCACTGATGCAATATTCTATGCTGGAACAGGCAACTTGCTCTGTAGGTCTGAGGATAGGGTTTTTATATTTGATCTTCAGCAGAGGATCGTTCTTGGAGATCTTCAGACCCCTTTCATCAAATATGTAGTCTGGTCTAATGACATGGAAAGCGTTGCTTTACTCAGCAAACATGCAATTGTCATTGCTAGCAAGAAGCTGGTGCACCAATGCACCCTCCATGAGACAATCCGTGTAAAAAGCGGAGCCTGGGATGACAATGGTATTTTTATTTACACAACATTAAATCATATCAAATACTGCCTCCCAAATGGAGACAGTGGGATAATCAAAACACTGGACGTCCCAATTTATATCACAAAGGTTGTTGGAAATGTCATCTTTTGCTTGGGTCGGGATGGGAAAAACAAAGCTATAACCATTGATGCTACAGAGTATATCTTTAAGCTTTCCCTGTTGAAGAAAAAATATGACCATGTTATGAACATGATAAGGAACTCACAGCTTTGCGGGCAAGCTATGATTGCTTATCTGCAACAGAAAGGATTTCCTGAGGTTGCCCTCCATTTTGTGAAAGATGAGAGAATTCGGTTCAATTTGGCATTAGAGAGTGGGAACATTCAAATTGCTGTTGCATCAGCTACAGCAATTGATGAGAAAGATCACTGGTACCGATTGGGAGTTGAAGCTCTTCGACAAGGCAATGCTGGTATAGTAGAGTATGCATATCAGAGGACCAAGAATTTTGAGAGGTTATCTTTCCTTTATCTCATCACTGGTAATGTGGAGAAACTTTCAAAGATGTTGAAAATTGCTGAAGTCAAGAATGATGTCATGGGCCAGTTTCACAATGCCTTATATATGGGTGATATTCGAGAGCGTGTTAAGATCTTGGAGAATGTGGGTCATTTGCCTCTTGCTTATATCACTGCGTCAACCCATGGGCTACAAGACATTGCTGAAAGGCTTGCAGCTGAACTGGGGGATAACGTTCCATCTTTGCCTGAGGGGAAAGTACCATCTCTCTTGATACCTCCTTCACCTGTGCTGTGTTGTGGTGATTGGCCCCTTCTTAGGGTCATGCGAGGCATATTTGATGGTGGGCTTAGAAACGCCGATCAAGATGCTGACGATGAAGAGTATGAGGCTGCTGAAGGTGATTGGGTTGAGGAGCTCGACATGGTTGACATTGAAGGCTTGCAAAATGGTGATGTTGCTGCAATGTTGGATGACGGAGAGGTGGCTGAAGAGGGCGATGAAGAGGGTGGGTGGGAGCTGGAAGATTTAGAGCTCCCCCCTGAAGCTGACACTCCAAAAGCTTCTGTCAGTACACGGTCATCAGTTTTTGTGGCGCCAACACCTGGGATGGCAGTTAGCCAGATATGGGTTCAGAGATCATCTCTTGCTGCTGATCATGCAGCCGCTGGCAATTTTGATACTGCAATGAGATTACTGAACAGGCAGCTTGGAATAAAAAACTTTGCCCCTTTGAGATCCATGTTCCTAGATCTTCATTCTGCCAGTCACTCTTATCTGCGCGCCTTTTCATCTGCTCCAGTTGTACCACTTGCTGTTGAAAGGGGTTGGACTGAGGCGTCTAGTCCAAATGTGAGAGGTCCACCTGCGCTTCCTTACAAATTATCCCAATTAGATGAAAAGCTCAAAGCTGGTTATAAGTCAACAACTGCTGGGAAATTCACCGAAGCTCTCCGTACATTTGTCAATATTCTTCATACAATTCCTTTGATTGTCGTAGAATCAAGGAGGGAAGTGGATGATGTAAAGGAATTGATTATCATAGTCAAAGAGTATGTTCTGGCTCTGCAGATGGAGCTGAAAAGAAGGGAAATGAAGGACAATCCAGTACGCCAGCAAGAGCTCGCAGCATATTTCACTCACTGCAATCTTCAGACACCTCACTTGAGGCTAGCTTTGTTGAATGCAATGACTGTCTGCTACAAAGCAAAGAACCTTGCCACTGCTGCTAACTTTGCCAGGAGACTACTTGAAACAAATCCTAGCATTGAAAACCAAGCTAAGACAGCAAGGCAAGTGCTAGCAGCTGCAGAAAGGAACATGACTGATGCCACAGAGTTAAACTATGATTTCCGAAACCCATTTGTAACTTGTGGGGCAACCTATGTGCCCATTTATCGCGGACAGAAGGATGTCTCTTGCCCATACTGTACTTCCCGTTTTGTACCAACCCAGGAGGGGCAGCTATGCACTGTGTGTGAACTTTCAGTAGTGGGGGCAGATGCTTCTGGATTGCTCTGTTCTCCTGCCCAGATTCGTTGA 3669 0.4388 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDIVVSASLDQTVRVWDIGSLKRKAGPPSDDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILSTHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYEFSTQRETQVLTIRRPGSLSLNQSPKTLSYSPTENAILLCSDVDGGSYELYCISKDSTIKDSFGRGDMQEPKKGLGGSAVFVARNRFAVLEKSSNQVLLKNLKNELVKKSVLPIATDAIFYAGTGNLLCRSEDRVFIFDLQQRIVLGDLQTPFIKYVVWSNDMESVALLSKHAIVIASKKLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVVGNVIFCLGRDGKNKAITIDATEYIFKLSLLKKKYDHVMNMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNVEKLSKMLKIAEVKNDVMGQFHNALYMGDIRERVKILENVGHLPLAYITASTHGLQDIAERLAAELGDNVPSLPEGKVPSLLIPPSPVLCCGDWPLLRVMRGIFDGGLRNADQDADDEEYEAAEGDWVEELDMVDIEGLQNGDVAAMLDDGEVAEEGDEEGGWELEDLELPPEADTPKASVSTRSSVFVAPTPGMAVSQIWVQRSSLAADHAAAGNFDTAMRLLNRQLGIKNFAPLRSMFLDLHSASHSYLRAFSSAPVVPLAVERGWTEASSPNVRGPPALPYKLSQLDEKLKAGYKSTTAGKFTEALRTFVNILHTIPLIVVESRREVDDVKELIIIVKEYVLALQMELKRREMKDNPVRQQELAAYFTHCNLQTPHLRLALLNAMTVCYKAKNLATAANFARRLLETNPSIENQAKTARQVLAAAERNMTDATELNYDFRNPFVTCGATYVPIYRGQKDVSCPYCTSRFVPTQEGQLCTVCELSVVGADASGLLCSPAQIR 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Vifa6g01146 1222 ProSitePatterns Trp-Asp (WD) repeats signature. 150 164 IPR019775 -
Vifa6g01146 1222 SUPERFAMILY DPP6 N-terminal domain-like 323 558 - -
Vifa6g01146 1222 Gene3D - 644 816 - -
Vifa6g01146 1222 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Vifa6g01146 1222 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Vifa6g01146 1222 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 121 - -
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 234 - -
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 88 IPR001680 GO:0005515
Vifa6g01146 1222 Pfam Coatomer (COPI) alpha subunit C-terminus 819 1222 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 276 - -
Vifa6g01146 1222 PIRSF Alpha-COP 1 1218 IPR016391 GO:0006886|GO:0006888|GO:0030126
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 79 - -
Vifa6g01146 1222 Coils Coil 1129 1156 - -
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 164 - -
Vifa6g01146 1222 PANTHER COATOMER 6 331 - -
Vifa6g01146 1222 SMART WD40_4 237 276 IPR001680 GO:0005515
Vifa6g01146 1222 SMART WD40_4 2 37 IPR001680 GO:0005515
Vifa6g01146 1222 SMART WD40_4 40 79 IPR001680 GO:0005515
Vifa6g01146 1222 SMART WD40_4 279 317 IPR001680 GO:0005515
Vifa6g01146 1222 SMART WD40_4 193 232 IPR001680 GO:0005515
Vifa6g01146 1222 SMART WD40_4 82 121 IPR001680 GO:0005515
Vifa6g01146 1222 SMART WD40_4 124 163 IPR001680 GO:0005515
Vifa6g01146 1222 Pfam WD domain, G-beta repeat 126 163 IPR001680 GO:0005515
Vifa6g01146 1222 Pfam WD domain, G-beta repeat 198 231 IPR001680 GO:0005515
Vifa6g01146 1222 Pfam WD domain, G-beta repeat 45 79 IPR001680 GO:0005515
Vifa6g01146 1222 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Vifa6g01146 1222 Pfam WD domain, G-beta repeat 84 121 IPR001680 GO:0005515
Vifa6g01146 1222 CDD Coatomer_WDAD_alpha 323 780 IPR047312 -
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 164 IPR001680 GO:0005515
Vifa6g01146 1222 FunFam Coatomer subunit alpha 1 319 - -
Vifa6g01146 1222 CDD WD40 9 317 - -
Vifa6g01146 1222 Gene3D - 1 319 IPR015943 GO:0005515
Vifa6g01146 1222 Pfam Coatomer WD associated region 342 772 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Vifa6g01146 1222 FunFam Coatomer subunit alpha 644 816 - -
Vifa6g01146 1222 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Vifa6g01146 1222 SUPERFAMILY WD40 repeat-like 4 315 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01146 Vifa-Chr6 371456161 371461475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01146 62 319 Miscellaneous Gene Families AT5G08390 25.194 2.06e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01146 K05236 - gmx:100802600 2288.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01146 6 371456161 371461475 Vifa6g01146 6 371456161 371461475 ECH