Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01142 ATGGCATCGTCCTCACGAGCGAAGAGCAACTCGCCATTTTCTCACCGGAAACCTGCTACTCCTCACTCTTCCGCTCCTTCCTCTTACAATTCCTTCACCGCCGGAAAATTAATGCCACGCTCCTGCTCTTCTTCCGCGTCTTCGTTTTTCAACTCCGGTGGCGGTGAACTCAGTGGCCGATCCATGACTCGGAGCAGTGGTCTAAATGAGTCAACTCATTATGACGCTCGAAGTTTTTCTTCTGCAATGGAGGAGGTAATCGCGGAGCCTCATGATTCTTCCGCGCCTGGAGATAGCATTTCTGTGACGATTCGGTTTAGGCCGTTGAGTGAAAGAGAGTATCAGAGAGGAGACGAGATCGCGTGGTATGCTGATGGTGATAAGTTTGTGAGGAATGAGAATAATCCAGCTACTGCTTATGCATTCGATAGAGTGTTTGGACCACATACAAATACCGATGAAGTGTATGAAGTAGCAGGCAGACCTGTTGTGAAGGCAGCCATGGAAGGGGTTAATGGAACTGTTTTTGCCTACGGTGTGACAAGTAGTGGAAAGACACATACAATGCATGGAGATCAAACCTCTCCCGGTATCATACCACTGGCTATAAAAGATGTTTTCAGCAGTATCCAAGATACTCCAGGAAGAGAGTTCTTACTTCGAGTGTCATATCTGGAAATATACAATGAGGTGATAAATGACTTGCTTGACCCAACCGGCCAAAATTTGCGTGTTAGAGAAGATGCACAGGGTACTTATGTGGAAGGTATAAAGGAAGAAGTTGTTTTGTCTCCTGGACATGCACTTTCCTTTATTGCTGCTGGAGAAGAGCACCGTCATGTCGGATCAAACAATTTTAACCTCTTCAGCAGCCGAAGTCACACAATTTTTACACTTATGATTGAAAGCAGTGCACATGGTGAAGAATATGATGGAGTGATATTCTCTCAGCTTAACTTGATTGATCTGGCTGGATCTGAAAGCTCAAAAACTGAAACTACTGGATTAAGAAGAAAAGAAGGATCATATATAAACAAAAGTCTTCTGACACTTGGAACTGTCATTGGAAAATTGAGTGAGGGGAAATCATCGCATGTTCCGTATCGAGATTCAAAGCTTACCCGCCTCCTGCAATCTTCACTTAGTGGCCATGGTCATGTTTCCCTTATCTGCACTGTGACTCCAGCATCCAGTAATATGGAAGAAACTCACAATACCTTGAAGTTTGCAAGCAGGGCAAAGCGAGTAGAAATATATGCTTCCCGTAATAAGATTATTGATGAGAAATCTCTTATAAAGAAATACCAGAAAGAAATTTCAGTTCTAAAACACGAACTTGATCAGTTGAAGAAGGGGATGCAACTCGGTGTCAACCATGAAGAGATTTTGACCTTAAAGCAAAAGTTAGAAGAAGGGCAAGTGAAAATGCAATCAAGATTGGAAGAAGAGGAAGAAGCGAAGGTTGCTCTAGCGAGTAGGATCCAAAAGCTAACCAAGCTCATTCTAGTTTCATCAAAGAATGGAATTCCTGGATATTTAACTGATGCTCCTGGTCATCAGCGAAGTCACTCTGTTGGCGAGGATGATAAGTATGATGCGCTACAGGATGGATCTCTTTTGTTTGAAGGTGAGAGCCAAAATGATGTTTCCACAGTGGCATCTGATCTGTCTCATGATGTTAGACATAGAAGAACATCAAGTAAACGGAACGAAGAGCTCTCCCCATCTAGCAGTATTATAACTGAATCAACACAAGCTGGTGAATTGATCAGCAGAACAAGGCTACCAGCAGGAGGGGTGACAATGTCTGATCAGATGGATCTCCTTGTTGAGCAAGTCAAAATGCTTGCTGGGGACATTGCGTTCAGTACCAGCACTCTAAAGCGCTTGACAGAACAGTCTGTAAATGATCCTGAAAGCTCTAGAACTCAGGTTGAGAACTTGGAACAAGAAATCCAAGAAAAAAGGAAGCAAATGAGGGGTTTAGAACAAAGAATAATCGAGAGTGGTGAAACTTCAGTAGCTAATCCATCCATGGTTGAAATGCAGCAGACAGTCACAAGATTGATGACACAGTGTAATGAAAAAGCATTTGAGCTGGAGATAAAATCTGCGGACAACCGTGTCCTTCAGGAACAATTAAATAGTAAGTGCTCAGAAAACAGAGAATTGCAAGAAAAGGTGAAGTTGCTAGAGAAGCAACTAGCAATAGATGCTAATGGTACCTCGTTGGTGCTTGCTGATGAATCTGTGTCTGGAGAGCACATTGATGAGTTGAAAAGGAAAATACAGTCCCAGGAGATTGAAAATGAAAATTTGAAGCTAGAACAAGTACAATTGTCAGAAGAGAATAGTGGATTGCATGTGCAGAATCAGAAACTCTCTGAAGAAGCTTCTTATGCCAAAGAACTGGCCTCAGCTGCTGCTGTAGAATTGAAAAATTTGGCTGGGGAGGTGACAAAACTTTCATTGCAGAATGCAAAGCTAGAAAAAGAATTGATGGCTGCTCGAGACCTGGCCAACACTCGAAGTGCTGTCGCACAGACAGTAAATGGTGTTCACCGCAAGTACCATGATCCAAGATCTGGAAGGAAGAGTAGACTTTCTAGCCGTGCAAATGAAAATTTGGGACCTGGTAGAGATGAGTTGGAGTCATGGAGTCTCGAAGTTGATGATCTGAAAATGGAACTTCAGGCTAAGAAACAACGAGAGGCAGTTCTTGAGGCTGCATTAGCCGAAAAGGAAATTATGGAAGAGGAGTACAGGAACAGGGTTGAAGAGGCAAAGAAAAGAGAATCCTCGTTGGAGAATGATTTAGCAAATATGTGGGTCCTCGTTGCAAAGTTAAAGAAAGAAGTGGGTGTTGTCTCAGAATCTAACGTCGAAAAAAAATTTAGTGATGGGGAAGCACACACAAATGATCCAAAAACTATTGACATTGAAAGCAATATTATCTCTAAGGAGCAGAGTTTGGATGTATCAAAACTGGACGACGAAACTCCCAAGGAAGAACCTTTGGTTGTTCGTCTCAAGGCACGAATGCAAGACATGAAGGAAAAAGAACTCAAGCATCTTGGTAATGGAGATGCCAACTCCCATGTTTGTAAAGTGTGCTTTGAATCTTCAACTGCAGCAATTCTTCTTCCATGCCGTCATTTTTGTTTGTGTAAATCTTGTTCACTTGCATGCTCCGAATGTCCAATATGCCGAACAAATATAGCAGATAGGCTTTTTGCCTTTACATCCTGA 3249 0.4251 MASSSRAKSNSPFSHRKPATPHSSAPSSYNSFTAGKLMPRSCSSSASSFFNSGGGELSGRSMTRSSGLNESTHYDARSFSSAMEEVIAEPHDSSAPGDSISVTIRFRPLSEREYQRGDEIAWYADGDKFVRNENNPATAYAFDRVFGPHTNTDEVYEVAGRPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQTSPGIIPLAIKDVFSSIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMIESSAHGEEYDGVIFSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKSSHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQKEISVLKHELDQLKKGMQLGVNHEEILTLKQKLEEGQVKMQSRLEEEEEAKVALASRIQKLTKLILVSSKNGIPGYLTDAPGHQRSHSVGEDDKYDALQDGSLLFEGESQNDVSTVASDLSHDVRHRRTSSKRNEELSPSSSIITESTQAGELISRTRLPAGGVTMSDQMDLLVEQVKMLAGDIAFSTSTLKRLTEQSVNDPESSRTQVENLEQEIQEKRKQMRGLEQRIIESGETSVANPSMVEMQQTVTRLMTQCNEKAFELEIKSADNRVLQEQLNSKCSENRELQEKVKLLEKQLAIDANGTSLVLADESVSGEHIDELKRKIQSQEIENENLKLEQVQLSEENSGLHVQNQKLSEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELMAARDLANTRSAVAQTVNGVHRKYHDPRSGRKSRLSSRANENLGPGRDELESWSLEVDDLKMELQAKKQREAVLEAALAEKEIMEEEYRNRVEEAKKRESSLENDLANMWVLVAKLKKEVGVVSESNVEKKFSDGEAHTNDPKTIDIESNIISKEQSLDVSKLDDETPKEEPLVVRLKARMQDMKEKELKHLGNGDANSHVCKVCFESSTAAILLPCRHFCLCKSCSLACSECPICRTNIADRLFAFTS 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01142 1082 Coils Coil 466 500 - -
Vifa6g01142 1082 Pfam Kinesin motor domain 105 416 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01142 1082 Coils Coil 707 734 - -
Vifa6g01142 1082 FunFam Kinesin-like protein KIN-7G 91 447 - -
Vifa6g01142 1082 Coils Coil 432 452 - -
Vifa6g01142 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 453 IPR027417 -
Vifa6g01142 1082 ProSiteProfiles Zinc finger RING-type profile. 1035 1070 IPR001841 -
Vifa6g01142 1082 Coils Coil 883 938 - -
Vifa6g01142 1082 ProSiteProfiles Kinesin motor domain profile. 99 416 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01142 1082 SMART kinesin_4 97 424 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01142 1082 FunFam Kinesin-like protein KIN-7D, mitochondrial 1009 1080 - -
Vifa6g01142 1082 MobiDBLite consensus disorder prediction 846 881 - -
Vifa6g01142 1082 MobiDBLite consensus disorder prediction 555 570 - -
Vifa6g01142 1082 Coils Coil 756 783 - -
Vifa6g01142 1082 PRINTS Kinesin heavy chain signature 366 387 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01142 1082 PRINTS Kinesin heavy chain signature 284 301 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01142 1082 PRINTS Kinesin heavy chain signature 317 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01142 1082 PRINTS Kinesin heavy chain signature 170 191 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01142 1082 PANTHER CENTROMERE PROTEIN E 99 951 IPR027640 GO:0003777|GO:0007018
Vifa6g01142 1082 Coils Coil 812 839 - -
Vifa6g01142 1082 SUPERFAMILY RING/U-box 1034 1074 - -
Vifa6g01142 1082 Coils Coil 645 665 - -
Vifa6g01142 1082 CDD KISc_CENP_E 99 416 - -
Vifa6g01142 1082 MobiDBLite consensus disorder prediction 52 72 - -
Vifa6g01142 1082 CDD mRING-HC-C3HC5_CGRF1-like 1035 1070 - -
Vifa6g01142 1082 MobiDBLite consensus disorder prediction 1 31 - -
Vifa6g01142 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1009 1079 IPR013083 -
Vifa6g01142 1082 MobiDBLite consensus disorder prediction 544 581 - -
Vifa6g01142 1082 Pfam Zinc finger, C3HC4 type (RING finger) 1033 1074 - -
Vifa6g01142 1082 Gene3D Kinesin motor domain 91 447 IPR036961 -
Vifa6g01142 1082 ProSitePatterns Kinesin motor domain signature. 316 327 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01142 Vifa-Chr6 370501448 370517083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01142 36 1082 Miscellaneous Gene Families AT4G39050 70.660 0.0 1450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01142 K11498 - gmx:100800460 1703.72