Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01135 ATGGCACTCAAAATCCCATCAACACTTCTCCCTCGTTCTCTCCACTTTCCTCCCCGCCAAAACCCTAATCTCTCACATTTTTCAACCGTTTCTAACCGTCACCTTCCTCTTCATTTCTTCACACCTTCAACCCTCTCAATCTCCGCACTTCACGGAACTCGCCTCCTAACCGCTCGCGCGATTCAAGGTCAAGAACTCACCGGCGATGATCTCTCAATCCCAGCCGAATTAAAAGAACTTGAAAAAGAAGGTGAAGAAGAAACAGTTACACAGAATACGGAGAAGAAATTAGCGGAACAAGGTATATGGATTCAGATGAAGGAAATTATCAAGTTTACAGGACCAGCAACTGGACTTTGGATCTGTGGACCGTTAATGAGTTTAATCGATACCGCGGTTATTGGTCAGGGAAGCTCCATTGAGCTTGCCGCTTTAGGTCCTGCTACAGTTGTTTGCGATTACATGAGCTATGTGTTCATGTTTCTATCAGTTGCTACTTCCAATATGGTTGCTACTGCACTTGCTAAACAGGATAGAGAAGAAGTGCAGCATCACATATCTGTCTTGCTTTTTATTGGCTTGGCTTGTGGCTTCATAATGCTTTTGTTCACATGGCTATTTGGTGCTACCACACTCACTGCTTTCACGGGGTCAAAGAGTGCACATGTAGTACCTGCAGCTAACACTTATGTACAGATTCGAGGCCTGGCATGGCCTGCTTTACTTGTTGGATGGGTTGCTCAGAGTGCAAGTCTTGGCATGAAAGATTCATGGGGACCCTTGAAAGCTTTGGCTGCTGCTAGTGTTATAAATGGCATTGGTGATATAGTTTTGTGCACCTATTTAGGCTATGGGATTGCAGGGGCCGCATGGGCTACAATGGCATCACAAGTTGTTGCTGCATATATGATGATGCAAGCTCTAAACATGAAGGGATACAATGCCTTTGCCTTATCTATCCCTTCGAGGAGGGAACTTCTGACAATTCTTGGGCTTGCTGCTCCTGTGTTTTTGACAATGATGTCAAAGGTGGCTTTCTACTCCCTGCTAATATATTTTGCAACATCAATGGGAACACATACAATGGCTGCTCATCAAGTCATGCTCCAAACCTTTAGCATGTGCACAGTATGGGGTGAACCTCTCTCCCAAACTGCTCAATCGTTTATGCCCGAATTGTTATATGGAGCTAATAGGAATTTGTCAAAGGCCCGAATGCTTCTAAGGTCTCTCGCAATAATTGGAGCTACACTTGGATTGTTATTAGGAGTTGTTGGAACTTCAGTACCTTTCTTATTTCCCTACATTTTTACGCATGATCAGATAGTCATTCGGGAGATGCACAAGGTGCTGATTCCATACTTTATAGCACTGGCTGTGACACCCCCTACTCACAGTCTTGAGGGAACGTTGCTGGCTGGAAGGGATCTAAGGTTCATAAGTCTGTCAATGAGTGGGTGCTTATGTGGGGGTGCACTAGTATTATTGATCTTGTGTAGCAGATATGGTTTGCAAGGCTGTTGGTTTTCCCTTGCACTATTTCAATGGGCTCGGTTTTCAATAGCCCTCCTGCGGCTTCTTTCTCCCAAAGGCATTTTATACTCGGAAGATATAGACCATTACAGAATGCAAAAGCATAGAACTGCTTAG 1650 0.4442 MALKIPSTLLPRSLHFPPRQNPNLSHFSTVSNRHLPLHFFTPSTLSISALHGTRLLTARAIQGQELTGDDLSIPAELKELEKEGEEETVTQNTEKKLAEQGIWIQMKEIIKFTGPATGLWICGPLMSLIDTAVIGQGSSIELAALGPATVVCDYMSYVFMFLSVATSNMVATALAKQDREEVQHHISVLLFIGLACGFIMLLFTWLFGATTLTAFTGSKSAHVVPAANTYVQIRGLAWPALLVGWVAQSASLGMKDSWGPLKALAAASVINGIGDIVLCTYLGYGIAGAAWATMASQVVAAYMMMQALNMKGYNAFALSIPSRRELLTILGLAAPVFLTMMSKVAFYSLLIYFATSMGTHTMAAHQVMLQTFSMCTVWGEPLSQTAQSFMPELLYGANRNLSKARMLLRSLAIIGATLGLLLGVVGTSVPFLFPYIFTHDQIVIREMHKVLIPYFIALAVTPPTHSLEGTLLAGRDLRFISLSMSGCLCGGALVLLILCSRYGLQGCWFSLALFQWARFSIALLRLLSPKGILYSEDIDHYRMQKHRTA 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01135 549 CDD MATE_DinF_like 105 528 IPR044644 -
Vifa6g01135 549 NCBIfam MATE family efflux transporter 117 508 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa6g01135 549 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 79 531 IPR044644 -
Vifa6g01135 549 Pfam MatE 335 473 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa6g01135 549 Pfam MatE 123 273 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01135 Vifa-Chr6 368062293 368067755 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01135 K03327 - gmx:100778835 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01135 6 368062293 368067755 Vifa6g01135 6 368062293 368067755 ECH