Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01133 ATGGCGTCCCTACATTTCAATCACACTTCTCTCTTCCAAAAACGCAACCTCATTTCACACTCCAACCGCCACTCACCTCTTCATTTCCTCCCACCTTCCCTTCTCAACAACACCACTATCCATTCACCTAAACAATGTATTATATCTTCGAAGCACCGTCACTCAGGATTCATACCAGCTCGCGTAGCTCAAAATCACGACGTCATTGATGACTCTGAACACACCGAACAAATCCGCGACGGTTTTGATGTGGACCGAGATGAAGAAGAAGTGAATGAACTGGTTGAGCAGAGTATATGGATTCAGATGAAGGAAATTGTTTTGTTTACTGGACCTGCTATTGGACTTTGGTTGTGTGGACCTTTCATGAGTCTCATTGATACTGCAGTTGTTGGCCAAGGAAGTTCAATTGAACTAGCTGCTTTAGGTCCTGCTACTGTTTTTTGCGATTATTTGGGCTACTCTTTCATGTTTTTGTCGATTGCTACTTCAAATATGGTTGCTACTGCACTTGCTAAACAGGATAGGGAGGAAGTGCAGCATCACATATCTGTCTTGCTTTTTATTGGTTTATCATGTGGCTTGGCGATGCTTTTGTTCACAAGGTTATTTGGTGCAACAATGATTGCTGCTTTTACTGGACCGAAGAATGTGCATATAGTACCAGCAGCTAATACTTATGTCCAGATTCGAGGGTTGGCATGGCCTTGTTTACTTGTTGGATCAGTTGCTCAGAGTGCAAGTCTTGGTATGAAAGATTCTTGGGGACCCTTGAAGGCTTTGGCTGCTGCCAGTATTATAAATGGAATTGGTGATATAATTCTGTGCAGATATTTAGGCTATGGGATTGCTGGGGCTGCATGGGCTACATTGGCATCACAAGTTGTTGCTGCGTATATGATGAGCCAAACTCTAAGCGAGAAGGGATACAATGCATTTGCCTTCTCCACTCCTTCAGGGAAGGAGTTTCTGTCAATATTTAGTCTTGCTGCTCCTGTATTTGTGACATTGATGTTAAAGGTGGTTTTCTACTCTCTAATTATATATTTTGCTACATCAATGGGTACACATAAAATCGCTGCTCATCAAGTCATGCTTCAGATCTACATGTTATGCGCAATATGTGGTGAACCTCTTTCCCAAACTGCTCAATCATTTATGCCTGAGTTGATGTATGGAGTAAATCGGAGTTTGGCAAAGGCTCAGTCACTGCTAAAGTCTCTTTTAACTATTGGAGCTGTATTTGGGTTGCTTTTGGGGATTTTTGGAACATTTGTTCCTTGGTTATTCCCCTACATTTTTACACCCGATCAGATGGTCATCAAAGAGATGCATAAGATTCTGATTCCATACTTTTTAGCGCTAGTGGTGACACCTGCAACTGTCGGCCTGGAGGGAACATTGCTGGCTGGAAGGGATCTAAGATTTATAAGTTTGTCAATGAGTGGATGCTTTTGTTTGAATGGTCTAGTATTACTGATCCTTAGTAGATATGGTTTGCTAGGCTGCTGGTTTGCCCTTGCTGGATTTCAATGGGCTCGATTTTCAATGGCCCTTCTGCGCCTTCTATCTCCCAAAGGCGTTTTATACTCGGAAGATACAAGCCAGTATGAGCGGCAAAAGTTGAAGACTGCATAG 1638 0.4255 MASLHFNHTSLFQKRNLISHSNRHSPLHFLPPSLLNNTTIHSPKQCIISSKHRHSGFIPARVAQNHDVIDDSEHTEQIRDGFDVDRDEEEVNELVEQSIWIQMKEIVLFTGPAIGLWLCGPFMSLIDTAVVGQGSSIELAALGPATVFCDYLGYSFMFLSIATSNMVATALAKQDREEVQHHISVLLFIGLSCGLAMLLFTRLFGATMIAAFTGPKNVHIVPAANTYVQIRGLAWPCLLVGSVAQSASLGMKDSWGPLKALAAASIINGIGDIILCRYLGYGIAGAAWATLASQVVAAYMMSQTLSEKGYNAFAFSTPSGKEFLSIFSLAAPVFVTLMLKVVFYSLIIYFATSMGTHKIAAHQVMLQIYMLCAICGEPLSQTAQSFMPELMYGVNRSLAKAQSLLKSLLTIGAVFGLLLGIFGTFVPWLFPYIFTPDQMVIKEMHKILIPYFLALVVTPATVGLEGTLLAGRDLRFISLSMSGCFCLNGLVLLILSRYGLLGCWFALAGFQWARFSMALLRLLSPKGVLYSEDTSQYERQKLKTA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01133 545 NCBIfam MATE family efflux transporter 112 504 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa6g01133 545 CDD MATE_DinF_like 102 524 IPR044644 -
Vifa6g01133 545 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 73 528 IPR044644 -
Vifa6g01133 545 Pfam MatE 118 270 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01133 Vifa-Chr6 367711836 367721664 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01133 K03327 - gmx:100778295 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01133 6 367711836 367721664 Vifa6g01133 6 367711836 367721664 ECH