Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01131 ATGGGGATTTTGGGAGTGATTCTGAAGAATCCAGATGATTTATATCCGTTGCTGAAGCTCAAAATCGCGGCGAGGAACGCCGAGAAGCAGATCCCGCCGGAACCACATTGGGGATTCTGTTACTCTATGCTTCATAAAGTTTCTAGAAGCTTCGGTCTCGTTATTCAGCAGCTTCGTCCCGAGCTTCGTGATGCCGTTTGTATATTCTATTTGGTTCTTCGTGCTCTTGATACAGTTGAGGATGATACTGGCGTAGAGACAGATGTCAAGGTTCCAATACTAATAGCTTTTCATCGCCATATCTATGATCATGATTGGCACTTTGGATGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCACGTTTCAACGGCTTTTCTGGAACTTGGAAAGAATTATCAGGATGCAATTGAAGACATTACCAAAAGAATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTAGAGACAATCGATGACTATGATGAATATTGCCACTATGTGGCAGGACTTGTTGGGCTTGGTTTATCAAAACTTTTCTACGCCTCTGGTACAGAGGATCTGGCAACAGACGACCTTTCAAATTCAATGGGTTTGTTTCTTCAGAAAACCAACATTATTCGAGATTATCTAGAAGACATCAATGAGATACCAAAGTCACGCATGTTTTGGCCACGGCAGATCTGGAGTAAATATGTTAACAAACTTGAGGACTTGAAATACGAGGAAAACTCCGTTAAGGCTGTGCAATGCTTAAACGACATGGTCACTAATGCTTTGCTGCATGCTGAAGATAGCTTAAAATACATGTCTGCATTACGAGACCCTTCTATATTTCGCTTTTGTGCTATTCCTCAGATAATGGCAATTGGAACACTTGCGTTATGCTACAACAACATTGGTGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGGTCTAACTGCCAAAGTGATTGACCGAACAAAGACTATGACTGATGTCTACGGGGCTTTCTTTGATTTTTCTTCCGTGTTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCAACAAAAACATTGAGCAGGCTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCCTAACCAAAAGGAAATCTTATGTCGTGGGGAATGAGAGCGGATATGGCCTGACCATGATTTTCATACTGGTCATCTTGTTTTCCATCTTTTTTGCTCATCTCTCTGCCAACCATCATAATAATTGA 1242 0.4171 MGILGVILKNPDDLYPLLKLKIAARNAEKQIPPEPHWGFCYSMLHKVSRSFGLVIQQLRPELRDAVCIFYLVLRALDTVEDDTGVETDVKVPILIAFHRHIYDHDWHFGCGTKEYKVLMDQFHHVSTAFLELGKNYQDAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFYASGTEDLATDDLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDLKYEENSVKAVQCLNDMVTNALLHAEDSLKYMSALRDPSIFRFCAIPQIMAIGTLALCYNNIGVFRGVVKMRRGLTAKVIDRTKTMTDVYGAFFDFSSVLESKVDKNDPNATKTLSRLEAIQKTCRESGLLTKRKSYVVGNESGYGLTMIFILVILFSIFFAHLSANHHNN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01131 413 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Vifa6g01131 413 SFLD Isoprenoid Synthase Type I 37 325 - -
Vifa6g01131 413 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Vifa6g01131 413 Gene3D Farnesyl Diphosphate Synthase 34 371 IPR008949 -
Vifa6g01131 413 NCBIfam squalene synthase 36 367 IPR006449 GO:0004310|GO:0008610
Vifa6g01131 413 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 402 IPR044844 GO:0004311
Vifa6g01131 413 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Vifa6g01131 413 SFLD Squalene/Phytoene Synthase Like 37 325 IPR002060 GO:0009058
Vifa6g01131 413 Pfam Squalene/phytoene synthase 45 314 IPR002060 GO:0009058
Vifa6g01131 413 FunFam Squalene synthase 1 34 370 - -
Vifa6g01131 413 SUPERFAMILY Terpenoid synthases 37 367 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01131 Vifa-Chr6 366747882 366754008 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01131 K00801 - gmx:547940 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01131 6 366747882 366754008 Vifa6g01131 6 366747882 366754008 ECH