Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01111 ATGGGAGCTATTGCGGGAGAAGAGATGTCGAAATGGGAGAAGATGCAGGGAGTGATGAGTGGTTGTGAAGAGAAGATCCTTGTGTTACTGAGGCTTAGGCCTTTGAGTGAGAAGGAAATTTCTGTTAATGAATCTGCAGATTGGGAATGTATTAATGACACTACCATCTTGTATCGGAACACGCTGCGTGAGGGTTCTACGTTTCCTAGTGCTTACACATTTGACAGAGTATTTCGTGGTGACTGTGCTACAAGGCAGGTATACGAGGAAGGAGCCAGAGAAATCGCTCTTTCAGTTGTTGGTGGAATTAACTCGAGTATTTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACTATGGTTGGAATAACTGAATATGCTGTAGCAGATATTTTTGACTACATAAAAAGGCATGAAGAAAGAGCATTTGCATTGAAGTTCTCAGCAATTGAAATTTACAATGAAATTGTTAGAGACCTCCTCAGCACTGACAACACTCCACTTAGGCTACGTGATGATCCTGAGAAAGGACCCGTTTTAGAGAAACTTACAGAAGAGACTCTGCGGGACTGGGGGCATTTGCAAGAGCTACTATCCTTTTGTGAAGCTCAGAGACAAGTAGGTGAGACATACCTGAATGAAAAGAGCTCAAGATCTCACCAAATTATAAGATTGACGATGGAAAGTTCTGCCAAGGAATTTCTGGGCAAAGGAAACTCAACGACCCTGTCAGCTAGTGTAAATTTTGTTGATTTGGCGGGGAGTGAGCGTGCTTCACAGGTATCTTCAGCTGGGGTGAGATTGAAAGAAGGTTGTCATATAAACCGGAGTTTACTTACTCTTTCAACCGTCATTCGTAAGCTTAGTAAGGGGAGACAAGGACACATCAATTACAGAGATTCTAAGTTGACACGGATACTGCAGCCTTGCTTAGGAGGCAATGCCAGAACAGCTATCATTTGCACTTTGAGCCCTGCGCGGAGTCACGTTGAGCAGACTAGAAACACACTTCTTTTTGCTTGTTGTGCCAAAGAAGTTACCACTAAAGCACAAGTTAATGTAGTGATGTCTGATAAGGCCTTGGTCAAGCAATTGCAAAAAGAGTTGGCCAGGTTGGAAGGAGAGTTAAAAACTCCTGTTACCTCCAATTGCGATTATGTAGCTTTGTTGAGAAAGAAAGATCAGCAGATAGAAAAGATGGATAAAGAGATTAGGGAGCTAACTAAGCAACGTGATCTTGCTGAATCAAGGATTGAGGATTTGCTCCGCACAGTGGGAAAGGAGAAGATATCTAAAAAAGAAGAAGAAATATGGGAAGATGACTGTTCAGTGTCAGAGTCATCAATCATTTGCGGTCCCAATACACGCATTAGGGAGTTCAACAATCCTCACTATAATGGTGGAGACAGTGGAAGTTATCGAGATGCTCTTGCTTGTACAGAAGAAGACCTTGATGAATACTGCAAAGAAGTTCGATGCGTCGAGTTGGAGGAGTCGTGTAGAGACAACTCAGAATATCTCGATCCATCGGGAAATGACAACGGGGATTCGGCTTTGACAGTATCTGGAGGGGAAAATGGAACAAGCCATGAAACATCTACACACGTGAATGAAGACAACCGTGATGAACATGTCATGTCAGGTAACATGTCAAATCATAGAAATCTCAAATTAACTAGAAGCTGGAGTTGTTCGGAGTATCGCATGACTGGTTCTCCTGAGACAGGAGAAATGGAGAGGACTCCAGCCAATGGATTTGAAAAAGGATTCCCTGGAAGACCAGATGGTTCGTTGAGAAAGTTCAATCCATTGAATTACGATGGTTCCACAAGCTTTTCAAGGAACGGTTCTCAGTCTTCTATTGGAAGTCAGTCAGTGGATGATGAACTTATAGGCAACAGCATGAGAATATCTGGTGATGAGGACATTACTAGCATCCATACGTTTGTTGCTGGAATGAAAGAAATGGTTAAACTTGAATATGAAAAGCAGCTTGTTGATGGTCAGGATCAGGAGACAGGAAGAAAACTAATGAAGTTTGATAGGAATGTGAAAGATGTAGGCATTGATCCAATGCTCGAGGCACCGGGAACACCTTTCAATTGGGGTGAACAAATAGACTCCATTTACATGGAGGTAGAGCTCAGAAGACTATGCTTCCTCAAAGAAACATTTTTTGATGATAACCAGTCTGAGAAAAACAGCCAACCAATCACATTAACTACAAGTGTGAAGGCTCTTCGGAGGGAGAGAGAAATGCTCGTGAAACTTATGCAGAAGAGGTTTTCTGAGGAAGAGAGGAAAAGGGTATTCAAAGAATGGGGTATTGGATTGAATTCAAAGCGCAGGCGGATGCAGCTAGCAAACCGTTTATGGAGCAATACAGATATGAACCACGTAATGCAGAGTGCTGCAGTAGTTGCGAGGTTAGTTAGGTTTTCAGAGCAGGGACGAGCCCTCAAGGAGATGTTTGGACTTAGCTTCACACCTCAACTCACACGACGAAGAAATTCATGGAAAAGTACCAGAGCATCTCTTCCATAG 2547 0.4276 MGAIAGEEMSKWEKMQGVMSGCEEKILVLLRLRPLSEKEISVNESADWECINDTTILYRNTLREGSTFPSAYTFDRVFRGDCATRQVYEEGAREIALSVVGGINSSIFAYGQTSSGKTYTMVGITEYAVADIFDYIKRHEERAFALKFSAIEIYNEIVRDLLSTDNTPLRLRDDPEKGPVLEKLTEETLRDWGHLQELLSFCEAQRQVGETYLNEKSSRSHQIIRLTMESSAKEFLGKGNSTTLSASVNFVDLAGSERASQVSSAGVRLKEGCHINRSLLTLSTVIRKLSKGRQGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKQLQKELARLEGELKTPVTSNCDYVALLRKKDQQIEKMDKEIRELTKQRDLAESRIEDLLRTVGKEKISKKEEEIWEDDCSVSESSIICGPNTRIREFNNPHYNGGDSGSYRDALACTEEDLDEYCKEVRCVELEESCRDNSEYLDPSGNDNGDSALTVSGGENGTSHETSTHVNEDNRDEHVMSGNMSNHRNLKLTRSWSCSEYRMTGSPETGEMERTPANGFEKGFPGRPDGSLRKFNPLNYDGSTSFSRNGSQSSIGSQSVDDELIGNSMRISGDEDITSIHTFVAGMKEMVKLEYEKQLVDGQDQETGRKLMKFDRNVKDVGIDPMLEAPGTPFNWGEQIDSIYMEVELRRLCFLKETFFDDNQSEKNSQPITLTTSVKALRREREMLVKLMQKRFSEEERKRVFKEWGIGLNSKRRRMQLANRLWSNTDMNHVMQSAAVVARLVRFSEQGRALKEMFGLSFTPQLTRRRNSWKSTRASLP 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01111 848 Pfam Kinesin motor domain 31 347 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01111 848 SMART kinesin_4 23 355 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01111 848 Pfam Domain of unknown function (DUF3490) 704 832 IPR021881 -
Vifa6g01111 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 378 IPR027417 -
Vifa6g01111 848 Coils Coil 478 498 - -
Vifa6g01111 848 PRINTS Kinesin heavy chain signature 247 265 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01111 848 PRINTS Kinesin heavy chain signature 102 123 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01111 848 PRINTS Kinesin heavy chain signature 297 318 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01111 848 PRINTS Kinesin heavy chain signature 211 228 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01111 848 MobiDBLite consensus disorder prediction 506 532 - -
Vifa6g01111 848 FunFam Kinesin-like protein 19 378 - -
Vifa6g01111 848 ProSitePatterns Kinesin motor domain signature. 246 257 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa6g01111 848 ProSiteProfiles Kinesin motor domain profile. 25 347 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g01111 848 CDD KISc_CENP_E 25 347 - -
Vifa6g01111 848 PANTHER CENTROMERE PROTEIN E 23 838 IPR027640 GO:0003777|GO:0007018
Vifa6g01111 848 Coils Coil 391 425 - -
Vifa6g01111 848 Coils Coil 356 376 - -
Vifa6g01111 848 MobiDBLite consensus disorder prediction 533 549 - -
Vifa6g01111 848 MobiDBLite consensus disorder prediction 503 550 - -
Vifa6g01111 848 Gene3D Kinesin motor domain 19 377 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01111 Vifa-Chr6 363385277 363389858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01111 22 378 Miscellaneous Gene Families AT5G06670 41.873 2.04e-78 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01111 K11498 - gmx:100820012 1258.43