Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01106 ATGGCCGAGGGAGAAGCAACAGAAGCTTTGAAATCTCTAGAAGATTTTGATCCTCAAAACAAGTCCAAAAGGAACAAATTCTCTTTTACTTGTGCTATCTTGGCTTCTATGACTTCTATTTTACTTGGATACAATATTGGTGTGATGAGTGGAGCAGCTATCTATATTAAAAGAGACCTTAAAGTTACTGACGTACAGATTGAAATTCTCTCAGGCATCATAAATATTTACTCTCCCATAGGCTCTTACATAGCAGGGAGGCTCTCCGATTGGATTGGTCGGCGTTACACGATTGTCCTCGCCGGAATAATTTTCTTCGTCGGAGCCATCCTTATGGGACTTTCCATGAACTATGCATTTCTTATGTTTGGTCGTTTCTTCGCCGGTGTTGGCATAGGTTTTGCTTTCTTGATTGCTCCTGTCTATATTTCTGAAGTCTCTCCAACTTCATCTCGTGGATTCCTCACTTCCTTGCCTGAGGTATTTTTGAATGGTGGGATTTTAATTGGATACATCTCAAACTATGGATTTTCGAAGTTGCCACTTCAGTATGGCTGGCGAGTGATGTTTGGAATTGGTGCCATTCCTTCTATATTTCTAGCCACAGCTGTATTAGCCATGCCAGAGTCACCGAGATGGCTTATTGCCAAGGGTCGAATAGGGGAAGCTAAAAAAATTCTCTATAAAATCTCTAATTCTAAAGAAGAAGCTCAACAGAGATTAGATGATATTAAAGAGATTATAGGGATTTCCTCGAACTGCGACGACGACATTGTTTCAGTCACAAAAGTTCAAGGTAGAGGTGTATGGAAAGAATTATTTATTTATCCTTCACCCGCGGTTCGTCACATTTTCATTGCCTCGCTTGGCCTTCACTTCTTCGCACAAGCAACTGGTATAGACGCTATCGTTTTATACAGTCCTAGAATTTTCGAGCAAGCTGGGATCCAATCCGACACAAATAAGCTTCTTGCAACTATAGCGGTTGGATTTGTGAAAACATTATTTGTCTTGGTGTCCACTTTTTTATTGGACCGTGTTGGGAGGCGCGTGTTATTGTTAACTAGTGTTGGTGGGTTAATACTCTCACTTCTTACATTGGCAATTAGTCTCACGATTATTGATAACTCACACGCCACATTGACATGGGCTATTTGGCTTAGTATAGCGGCAGTTTTGTCCTATGCTGGTACTTTTTCAATTGGGTCGGGTCCTATTACATGGGTTTATAGTTCTGAGATATTTCCGTTGAGACTTCGAGCTCAAGGCGTGTCTATTGGGGCGATGATGAATAGGCTCACTAGTGGAGTCATATCCATGACTTTTTTATCCCTTTCGAAGACCATCACTATTGGGGGTGCTTTTTTTCTTTTTGCAGGAATTGCAACTATAGCATGGATTTTTCACTATACTTTGCTCCCAGAAACACATGGCAAAACATTGGAGGAAATAGAAGGATCTTTTGGTAATATCTGGAGTAAGCGAAATGATAGTTCCAATGTTGAAGGAGTGAACACCTTAAACCTTCATTTGATTAGTGGTTAG 1545 0.4065 MAEGEATEALKSLEDFDPQNKSKRNKFSFTCAILASMTSILLGYNIGVMSGAAIYIKRDLKVTDVQIEILSGIINIYSPIGSYIAGRLSDWIGRRYTIVLAGIIFFVGAILMGLSMNYAFLMFGRFFAGVGIGFAFLIAPVYISEVSPTSSRGFLTSLPEVFLNGGILIGYISNYGFSKLPLQYGWRVMFGIGAIPSIFLATAVLAMPESPRWLIAKGRIGEAKKILYKISNSKEEAQQRLDDIKEIIGISSNCDDDIVSVTKVQGRGVWKELFIYPSPAVRHIFIASLGLHFFAQATGIDAIVLYSPRIFEQAGIQSDTNKLLATIAVGFVKTLFVLVSTFLLDRVGRRVLLLTSVGGLILSLLTLAISLTIIDNSHATLTWAIWLSIAAVLSYAGTFSIGSGPITWVYSSEIFPLRLRAQGVSIGAMMNRLTSGVISMTFLSLSKTITIGGAFFLFAGIATIAWIFHYTLLPETHGKTLEEIEGSFGNIWSKRNDSSNVEGVNTLNLHLISG 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01106 514 Gene3D MFS general substrate transporter like domains 20 490 IPR036259 -
Vifa6g01106 514 ProSitePatterns Sugar transport proteins signature 2. 127 152 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa6g01106 514 Pfam Sugar (and other) transporter 31 486 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa6g01106 514 SUPERFAMILY MFS general substrate transporter 17 485 IPR036259 -
Vifa6g01106 514 ProSitePatterns Sugar transport proteins signature 1. 85 102 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa6g01106 514 ProSiteProfiles Major facilitator superfamily (MFS) profile. 31 477 IPR020846 GO:0022857
Vifa6g01106 514 NCBIfam sugar porter family MFS transporter 18 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01106 514 PRINTS Sugar transporter signature 389 410 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01106 514 PRINTS Sugar transporter signature 122 141 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01106 514 PRINTS Sugar transporter signature 295 305 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01106 514 PRINTS Sugar transporter signature 412 424 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01106 514 PRINTS Sugar transporter signature 39 49 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01106 514 FunFam probable polyol transporter 4 21 491 - -
Vifa6g01106 514 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 20 489 IPR045262 GO:0015144
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01106 Vifa-Chr6 361618436 361620263 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01106 14 502 Organic Solute Cotransporters AT3G18830 64.372 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01106 - - gmx:100816478 739.569