Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01080 ATGGAAGTTAACTTCTGCTTCAACCACCACCACCGCGCCTTCCGATTAACCTCTCCCCTCTCCGTTTCCTCTAATCGCACACAGTTCCTCGGTTGCAATCGCAGTCTCCGACCACCTCCACCACCACCACCACCTTCATCAGTTCGCTTTTCAAACAAACACAGCAATAGGTTAGGGCTTCTTCGCCTCCATTCACCGCGCTTCGTCTTCAAGGCTTCTTTTCAGTCTCGTCCGCTTATAGTCGTTGTCGTCGTTGTTACTTTATCTGCTATTTCTTTCATTCACTTCACTCTCAACAAGAGAAAGAAGAATCTCAACCAGGGACGTGCAAAATTTGCGTTATCACCACAAGGAAGTAATGTTGGGAACCAGGTTATTGATAGTCAGATTCTCGGTTTTCCAGAATTTCAAAGGGACAACTCACTGAACGAAGTTGGGAAGTTAAGTGATCACCAAGGAAAGGACAACCATGTTTTTGAGGACCAAGAGGTCCACCGTCAATTTTTGGAATCTTCCATGGTGCAGGAAACAGCCTTCAAGACTCGTACATTAGATTCATCTTCGTCTGTTCTTGACTCTAGTGTCAATGGTAACAGTTCCCATGTATTAGAGGAGCCTTTTTTATCTGTGGCTTTCCAATCAAGTCCATTGGAGCCTATAGCTTTTGCTGAGGAAATGACTCTACAGGTGGAAGAAAATCAAGATGTAGTTGACTCTAATCTCGAGTTGCCTTTGAGTATGGTCAAACCTGAGCAAAGTGCTTCTTCTGTTGGTTTAGGTAACGCGCTCGATCCAATCAATGACCACATTGATGAAAAAATTGAGCTTCATGCCATCAAAAGTGATGTCCCTTTTGGTGAATCTGTTAGGGAAGGGTTGTACATGTTTTATGAGGACAGTAATTCTGCACCGGGGTCCATTACACCCTTGAGTAGTAGCAAGTCATTTTCTCCCAGTGATTCTTTCGTGAATAGAACAGAACTGCCAGAAGCTATAAGAAATATCAGCCTGAATGGATTAGGATTATCAGCAGATGTTTGTCTACAAAATGCAGAGTACATTGACAGAGAAGGCTACCCTCCGCAGCATACTAGTAAAAATTTGAGGAAAGCCAGCAGATATACAAGAGACGGGGAAAGGAACTATATGGATCGTAATAGTAACAATGATTTGCCCCAAAGTTCTCACATCATGGTGCAGGTGGATCAGAAAAATGATCAAATTAGGGTTCACGATGGTCAGAAAATCGATCCTTCAGAGCTTCTAAGCAAATATAATACCTTGCTAAAATCTGGGAGGTTACGTGAATGTGTAGAATTGCTTAAAGATATGGAAATGAAGGGTTTATTAGATATGACAAAGGTTTATCATGCCAAGTTTTTCAACAGCTGCAAGAAACAAAAAGCTGTTAAAGAAGCTTTTGATTATGTTAGGCTTATTCCAAATCCAATGCTGAGTACATTTAATATGCTTATGTCAGTGTGTGGAAGCTCCCAAGATTCCGAAGGGGCTTTCCATGTTATGCAACTTCTTAAGGATGCTCGACTAGATCCTGATTGCAAACTTTATACCAATCTGATATCAACTTGTGCTAAAAGTGGGAAGATTGATCTAATGTTTGAGGTGTTTCACAAGATGGTTAATTCTGGAGTGGAAGCTAATGTTCATACCTATGGGGCACTTATTGATGGTTGTGCTAGAGCTGGTCAAGTAGGTAAAGCATTTGGTGCTTATGGGATAATGAGGTCAAAGAATGTGAAGCCAGATCGTGTTGTTTTCAATGCACTTATAGCTGCATGTGCACAGTCCGGAGCAGTGTCTCGTGCCTTTGATGTGGTAGCAGAAATGGAAGCTGAAATACAGCCTATTGAGCCAGACCATGTAACTTTTGGTACATTGATGAAGGCATGTGCAAAGGCTGGTCAGGTTGAACGAGCACAGGAAGTTTATAAGATGATACAACAATATAATATAAAGGGATCTCCAGAAGTTTACACAATCGCAGTTAATTCTTGTAGTGAAACTGGAGATTGGGAATTTGCACGCAGTGTATACAATGATATGACCCAGAAAGGGGTGCTCCCTGATGAGATGTTTATGAGTGCACTAATAGATGTTGCTGGGCATGCTAAAAAGCTGGAGGCTGCCTTTGATATCCTACAACAAGCCCGGAAAGAAGGAGTACAGATTGGAGCAATGACATATAGCTCGTTGATGGGTGCCTGTTGCAAGACAAGAGATTGGCAGAAAGCGTTGGAGCTTTATGAAAATCTTAAATCTCTTAAATTGGTGCAAACAGTTTCAACTGTTAATGCATTGCTCACCGCACTTTGTAACGGGGATAGATTTCAGAAAGCTTTGGAGGTTTTATCTGAAATGAAAGGTTTAGGATTGCGCCCTAACAGCATCACATTCTCAATACTTATTGTGGCCAGTGAGAAGAAGGATGACATGGAGGCAGCTCAAATGCTCCTTTCTCAAACCAAAAAGGATGGTGCAGCCCCTACTCTAATCATGTGTCGATGCATAATTGGAATGTGCCTGCGTAGATTTGAGAAAGCTTGCCTTGTTGGTGAACCTGTTTTATCTCTTGATTCAGGACGGCCACAAGTAAATAATGAATGGACATCATTGGCTTTAATGGTGTATCGTGAGACAATCGGAGCTGGTGAAAAACCTACAAGTGAAATGTTGTCACAAATCCTGGGATGCTTGAAACTCCCTTATGATACATGTATAAAAAATAGACTTGTTGAGAACCTGGGAGTAAGTGCTGAATCCTCAAAAAGTTCAAACCTCTGTTCATTGATAGATGGATTTGGTGAATATGATCCTCGTGTCTTTTCAATACTTGAGGAAGCTGCTTCATATGGAGTTGTTCCATCTGTATCATTTAAAGTGAATCCTATTGTCATCGATGTTAAAGAATTGCATCCTTATACTGCTGAGGTATACCTCTTAACTGTTTTGAAAGGTCTCAAGCATCGACTAGCAGCAGGTGCAAAACTACCAAATATAATCATTTTATTGCCCGTAGAAGAAACAAAAGTTTTGTTTCCCAATGGGGAAAAGATTATTATACTTGCAGAAAGAGGTGGCCAAGCAGTTGCAGCGCTGTTCAGGAGGCTTCATATTCCTTACCAGGGTAGTGAATCGAATGGGAAGCTTAGAATAAATAGTCCGGGCCTGACAAAATGGTATCAGCCAAAGCTTGCATCTCCCAAATTCGGTTTACAAGGTGACTGGAGCTCATCCCAAGCACGACTCGGCAAAAACATTAGCAATCAGCAGCGAAACATTCGAACTGGCAATCTATCTTTAGACTAA 3327 0.4157 MEVNFCFNHHHRAFRLTSPLSVSSNRTQFLGCNRSLRPPPPPPPPSSVRFSNKHSNRLGLLRLHSPRFVFKASFQSRPLIVVVVVVTLSAISFIHFTLNKRKKNLNQGRAKFALSPQGSNVGNQVIDSQILGFPEFQRDNSLNEVGKLSDHQGKDNHVFEDQEVHRQFLESSMVQETAFKTRTLDSSSSVLDSSVNGNSSHVLEEPFLSVAFQSSPLEPIAFAEEMTLQVEENQDVVDSNLELPLSMVKPEQSASSVGLGNALDPINDHIDEKIELHAIKSDVPFGESVREGLYMFYEDSNSAPGSITPLSSSKSFSPSDSFVNRTELPEAIRNISLNGLGLSADVCLQNAEYIDREGYPPQHTSKNLRKASRYTRDGERNYMDRNSNNDLPQSSHIMVQVDQKNDQIRVHDGQKIDPSELLSKYNTLLKSGRLRECVELLKDMEMKGLLDMTKVYHAKFFNSCKKQKAVKEAFDYVRLIPNPMLSTFNMLMSVCGSSQDSEGAFHVMQLLKDARLDPDCKLYTNLISTCAKSGKIDLMFEVFHKMVNSGVEANVHTYGALIDGCARAGQVGKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVSRAFDVVAEMEAEIQPIEPDHVTFGTLMKACAKAGQVERAQEVYKMIQQYNIKGSPEVYTIAVNSCSETGDWEFARSVYNDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGAMTYSSLMGACCKTRDWQKALELYENLKSLKLVQTVSTVNALLTALCNGDRFQKALEVLSEMKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSQTKKDGAAPTLIMCRCIIGMCLRRFEKACLVGEPVLSLDSGRPQVNNEWTSLALMVYRETIGAGEKPTSEMLSQILGCLKLPYDTCIKNRLVENLGVSAESSKSSNLCSLIDGFGEYDPRVFSILEEAASYGVVPSVSFKVNPIVIDVKELHPYTAEVYLLTVLKGLKHRLAAGAKLPNIIILLPVEETKVLFPNGEKIIILAERGGQAVAALFRRLHIPYQGSESNGKLRINSPGLTKWYQPKLASPKFGLQGDWSSSQARLGKNISNQQRNIRTGNLSLD 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01080 1108 Gene3D Tetratricopeptide repeat domain 573 725 IPR011990 GO:0005515
Vifa6g01080 1108 Gene3D Tetratricopeptide repeat domain 726 793 IPR011990 GO:0005515
Vifa6g01080 1108 Gene3D Tetratricopeptide repeat domain 794 857 IPR011990 GO:0005515
Vifa6g01080 1108 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 711 858 - -
Vifa6g01080 1108 NCBIfam pentatricopeptide repeat 628 659 IPR002885 -
Vifa6g01080 1108 NCBIfam pentatricopeptide repeat 664 697 IPR002885 -
Vifa6g01080 1108 NCBIfam pentatricopeptide repeat 769 801 IPR002885 -
Vifa6g01080 1108 NCBIfam pentatricopeptide repeat 734 764 IPR002885 -
Vifa6g01080 1108 NCBIfam pentatricopeptide repeat 556 589 IPR002885 -
Vifa6g01080 1108 NCBIfam pentatricopeptide repeat 522 554 IPR002885 -
Vifa6g01080 1108 Pfam Pentacotripeptide-repeat region of PRORP 486 625 IPR033443 -
Vifa6g01080 1108 Pfam Pentacotripeptide-repeat region of PRORP 634 776 IPR033443 -
Vifa6g01080 1108 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 20 1107 - -
Vifa6g01080 1108 Pfam PPR repeat 428 449 IPR002885 -
Vifa6g01080 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 626 660 IPR002885 -
Vifa6g01080 1108 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 433 564 - -
Vifa6g01080 1108 Gene3D Tetratricopeptide repeat domain 449 568 IPR011990 GO:0005515
Vifa6g01080 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 731 765 IPR002885 -
Vifa6g01080 1108 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 619 710 - -
Vifa6g01080 1108 MobiDBLite consensus disorder prediction 358 392 - -
Vifa6g01080 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 661 695 IPR002885 -
Vifa6g01080 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 766 800 IPR002885 -
Vifa6g01080 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 619 IPR002885 -
Vifa6g01080 1108 MobiDBLite consensus disorder prediction 370 384 - -
Vifa6g01080 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Vifa6g01080 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01080 523 848 Glycosyltransferase AT1G05670 24.159 2.23e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01080 - - gmx:100814164 1555.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01080 6 354715743 354727013 Vifa6g01080 6 354715743 354727013 ECH