Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01062 ATGGGTGTTCTTGATCACATCTCCGACCTCTTTGACTGCTCTTACAGAAGAAGTTCCAAGTACAAGAAGAAGCGCAAGCAATTCCAGACGGTAGAGGTGAAAGTGAAGATGGACTGTGAAGGATGTGAGAGAAAAGTGAAGAAATCAGTTGAAGGGATGAAAGGGGTGACACAAGTGGAAGTTGAAGGGAAAGCAAACAAAGTAACTGTTACTGGGTACGTTGAGCCTTCCAAGGTCGTGAAACGAATTGTTTATCGAACGGGGAAAAGGGCTGAGCTATGGCCGTATGTTCCATACGACGTGGTTGCACACCCTTATGCTCCTGGTGTTTATGACAAAAAAGCACCTTCCGGTTACGTTAGAAACGCTTATGATCCTAATGTTTCTAACCTCGCTCGTGCTACTTCTGCGGAAGTTAGGTTTCATATGCCCATTTGTGCCACTCTTGCCACATATTCTCTTCGACGCCATGGTTGTGTGTTTATGGATGTTGAAAGTTGGTTCAAGTACTGA 513 0.4483 MGVLDHISDLFDCSYRRSSKYKKKRKQFQTVEVKVKMDCEGCERKVKKSVEGMKGVTQVEVEGKANKVTVTGYVEPSKVVKRIVYRTGKRAELWPYVPYDVVAHPYAPGVYDKKAPSGYVRNAYDPNVSNLARATSAEVRFHMPICATLATYSLRRHGCVFMDVESWFKY 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01062 170 CDD HMA 32 92 IPR006121 GO:0046872
Vifa6g01062 170 Gene3D - 15 95 - -
Vifa6g01062 170 ProSiteProfiles Heavy-metal-associated domain profile. 28 92 IPR006121 GO:0046872
Vifa6g01062 170 Pfam Heavy-metal-associated domain 33 83 IPR006121 GO:0046872
Vifa6g01062 170 FunFam Heavy metal-associated isoprenylated plant protein 26 15 94 - -
Vifa6g01062 170 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 30 126 IPR045181 GO:0046872
Vifa6g01062 170 SUPERFAMILY HMA, heavy metal-associated domain 28 95 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01062 Vifa-Chr6 351507092 351508010 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01062 - - gmx:547973 233.032