Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01057 ATGGCTTCCAAGAGAATAGTAAAAGAGCTCAAGGACTTGCAGAGAGATCCACCAACTTCATGCAGTGCAGTATCAGGCCCTGTCGGCGAGGACATGTTTCATTGGCAAGCTACCATCATTGGTCCAAATGATAGTCCTTATGCTGGTGGTGTTTTCCTTGTTACCATTCATTTTCCTCCTGATTATCCCTTCAAACCTCCCAAGGTTGCATTCAGGACAAAGGTATTTCATCCAAACATTAACAGCAACGGAAATATTTGCCTCGACATACTCAAAGAACAATGGAGTCCTGCTCTCACAATATCCAAGGTGCTGCTCTCTATATGTTCTTTGCTAACAGATCCAAATCCCGATGACCCTCTTGTGCCTGAAGTCGCTCATATGTGCAAAACCGACAGAGTCAAGTATGAGTCCACTGCTAGAAGCTGGACTCAGAAGTTTGCCATGGGATAA 453 0.4459 MASKRIVKELKDLQRDPPTSCSAVSGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEVAHMCKTDRVKYESTARSWTQKFAMG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01057 150 CDD UBCc 3 144 IPR000608 -
Vifa6g01057 150 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 91 IPR023313 -
Vifa6g01057 150 Gene3D Ubiquitin Conjugating Enzyme 1 150 IPR016135 -
Vifa6g01057 150 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 31 137 - -
Vifa6g01057 150 SUPERFAMILY UBC-like 2 149 IPR016135 -
Vifa6g01057 150 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 149 IPR000608 -
Vifa6g01057 150 SMART ubc_7 4 149 - -
Vifa6g01057 150 FunFam Ubiquitin-conjugating enzyme 28, E2 1 150 - -
Vifa6g01057 150 Pfam Ubiquitin-conjugating enzyme 5 143 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01057 Vifa-Chr6 350689737 350690474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01057 2 116 Miscellaneous Gene Families AT3G17000 37.190 2.28e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01057 K06689 - gmx:100787053 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01057 6 350689737 350690474 Vifa6g01057 6 350689737 350690474 ECH