Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01054 ATGTCTTCACCTCTCAAACTTCTTTGTATTTCCTTCCTTTCCATCATCACTATTGTTTCTGCTTCCTTCATTCAAGGCCCGAAAACTGTCACTTACGACTCCCGCTCACTCCTTATCAATGGAAAACGAGAGCTTTTCTTCTCCGGTTCCATTCATTATCCACGAAGCGTCCCAGAGGAGTGGCCAGAGATCCTTGATAGAGCAAAACACGGAGGGTTAAACTTAATCCAAACATACGTTTTTTGGAATGGTCACGAGTTTGAGAAAGGCCAGTCGAACTTTGAAGGCAGGTATGATTTGGTAAGATTCCTTAGGCTTGTACAAGAGAAAGGAATGTATGCTACCCTTAGAGTTGGCCCTTTCATCCAAGCTGAATGGAATCATGGAGGACTTCCATATTGGCTAAGAGAGGTCCCCGACATCATATTCCGTTCGAACAATGAACCTTTTAAGACACATATGACAGAATACGTATCATCGATTATAGAAAAAATGAAACAAGAAAAACTCTTTGCTCCTGAAGGAGGCCCTATCATCTTGGCACAGATTGAGAATGAGTACAACCATATCCAACTTGCTTATGAACATGAAGGAGATAGTTATGTTCAATGGGCTGCAAAAATGGCAGTTTCACTATATAACGGAGTTCCATGGATCATGTGCAAGCAAAAGGATGCTCCTGATCCAGTTATTAATGCTTGCAATGGAAGGCACTGTGGTGATACCTTCACAGGTCCAAACAAACCATACAAACCATCCATCTGGACTGAAAACTGGACTGCTCAGTATAGAGTATTCGGAGATCCACCGTCCCAAAGATCCGCAGAAGACATCGCCTTCTCAGTTGCTCGCTTCTTCTCTAAGAACGGATCTTTAGTCAACTACTATATGTATCATGGTGGAACAAATTTTGGTAGAACAACCTCTGCCTTTACAACAACATGTTACTACGACGAAGCTCCTCTTGATTCATACGGTCTGCAAAGAGAACCAAAGTGGGGTCACCTAAAAGATGTTCACAAGGCTCTGAGCCTATGTAAGAAGGCTCTACTCAACGGTGAACATACGGTACAAAAAATTAGCCAGTATCATGAGATTATAGTGTATGAAAAGAAGGAAAGTAATTTCTGTGCTGCTTTCATCACTAACAACCACACCAAGAATCCGAAAGTAATAGAATTCAGAGGTTCGAGCTATTATATGCCTCCACGTTCCATCAGCATTCTTCCTGATTGTAGAACTGTGGTCTTCAACACTCAAAATATTGCTGCACAACACAACTCAAGAAACTTCGACAAATCAAAGGCTGCAAACAATCACAAGTGGGAGGTGTATTCTGAGCCTATTCCAACTTCCAAGGAATTGCCACCAAAACAAAAAATTCCTGCTGAGCTTTACAGCTTGCTTAAGGACACCACTGATTATGGATGGTACACCACTAGTGTGGAGTTTGGTCCAGAAGACTTACCAAAGAAGAATGAGATTTCACCAGTTCTTCGTATTCTTAGTCTCGGCCACTCATTGCTTGCTTTTGTAAATGGACAATACGTTGGATCTAATCATGGTAGCCATGAAGAAAAAGGCTTTGAATTCCAGAAACCTGTAAGCTTCAAAGTTGGAATTAACCACATAGCTATCTTAGCTTCTTTAGTAGGACTACCTGATAGTGGAGCATACATGGAGCACAGGTATGCCGGACCTAAGACTATAACCATCCTTGGTTTGAACTCTGGAACAATTACTCTCACTGCTAATGGTTGGGGTCACCAGGTTGGTCTCGAAGGCGAGAAACATGCAATTTTCAGTGAGGAGGGATCAAAGAAAGTAGAGTGGAAAGATGCCAAGGGACATGGTTTACCTCTCTCTTGGTACAAGACAAATTTTGCAACTCCAGAGGGAAAATGCCCAATTGCTATCAGAATGACTGGTATGGGAAAAGGAATGATTTGGGTGAATGGCGAAAGCCTCGGCCGTCACTGGTTGAGCTATCTCTCTCCACTTGGAAAGCCTACTCAATCAGAGTACCACATTCCAAGATCATTCCTTAAACCACAAGACAACTTGCTTGTTATATTAGAGGAAGATATAGCACATCCAGAAAACGTTGAGATAGTAAGGGTCAACAGAGATACAATATGCAGTTACATCACAGAGAATCACCCTCCCAATATCAAGTCATGGTCAAGTAAGAACCAAAAACTCACACCTGTTTCGCCAAACCTCACTCCAGCAGCTGTACTCAAGTGCCCAAACCAAAAAGCCATTAAGGCTGTTGAGTTTGCAAGCTTTGGTGATGCTTTAGGTTTCTGTGGAGAGTTTATCATGGGAAGTTGTCATGCACCTTCCTCCCAGAAGATTGTTGAGCAGTATTGCTTAGGAAAAGGATCTTGCGCGGTTCCGATGGACAAAGCACTCTTCACCAATGGTAAGGATGAATGCCCGAATGCGATAAAGACACTAGCAATCCAAGTGAAGTGTGGTCCCTCCAGGGATGAGAAGGATATGAACAATGACGATGATGACGACGATGTGGTTGATGGGAAAGGTTCGAGTCAGTGA 2559 0.4267 MSSPLKLLCISFLSIITIVSASFIQGPKTVTYDSRSLLINGKRELFFSGSIHYPRSVPEEWPEILDRAKHGGLNLIQTYVFWNGHEFEKGQSNFEGRYDLVRFLRLVQEKGMYATLRVGPFIQAEWNHGGLPYWLREVPDIIFRSNNEPFKTHMTEYVSSIIEKMKQEKLFAPEGGPIILAQIENEYNHIQLAYEHEGDSYVQWAAKMAVSLYNGVPWIMCKQKDAPDPVINACNGRHCGDTFTGPNKPYKPSIWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGSLVNYYMYHGGTNFGRTTSAFTTTCYYDEAPLDSYGLQREPKWGHLKDVHKALSLCKKALLNGEHTVQKISQYHEIIVYEKKESNFCAAFITNNHTKNPKVIEFRGSSYYMPPRSISILPDCRTVVFNTQNIAAQHNSRNFDKSKAANNHKWEVYSEPIPTSKELPPKQKIPAELYSLLKDTTDYGWYTTSVEFGPEDLPKKNEISPVLRILSLGHSLLAFVNGQYVGSNHGSHEEKGFEFQKPVSFKVGINHIAILASLVGLPDSGAYMEHRYAGPKTITILGLNSGTITLTANGWGHQVGLEGEKHAIFSEEGSKKVEWKDAKGHGLPLSWYKTNFATPEGKCPIAIRMTGMGKGMIWVNGESLGRHWLSYLSPLGKPTQSEYHIPRSFLKPQDNLLVILEEDIAHPENVEIVRVNRDTICSYITENHPPNIKSWSSKNQKLTPVSPNLTPAAVLKCPNQKAIKAVEFASFGDALGFCGEFIMGSCHAPSSQKIVEQYCLGKGSCAVPMDKALFTNGKDECPNAIKTLAIQVKCGPSRDEKDMNNDDDDDDVVDGKGSSQ 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01054 852 SUPERFAMILY Galactose-binding domain-like 584 732 IPR008979 -
Vifa6g01054 852 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
Vifa6g01054 852 Gene3D - 742 833 IPR043159 -
Vifa6g01054 852 FunFam Beta-galactosidase 27 346 - -
Vifa6g01054 852 Gene3D Glycosidases 27 346 - -
Vifa6g01054 852 ProSiteProfiles SUEL-type lectin domain profile. 743 827 IPR000922 GO:0030246
Vifa6g01054 852 MobiDBLite consensus disorder prediction 828 852 - -
Vifa6g01054 852 FunFam Beta-galactosidase 589 713 - -
Vifa6g01054 852 Gene3D - 590 716 - -
Vifa6g01054 852 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 PRINTS Glycosyl hydrolase family 35 signature 291 306 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 PRINTS Glycosyl hydrolase family 35 signature 254 269 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 SUPERFAMILY (Trans)glycosidases 26 347 IPR017853 -
Vifa6g01054 852 Pfam Glycosyl hydrolases family 35 36 342 IPR031330 -
Vifa6g01054 852 Gene3D - 365 566 - -
Vifa6g01054 852 SUPERFAMILY Galactose-binding domain-like 406 567 IPR008979 -
Vifa6g01054 852 CDD Gal_Rha_Lectin_BGal 743 826 - -
Vifa6g01054 852 Pfam Beta-sandwich domain in beta galactosidase 350 422 IPR041392 -
Vifa6g01054 852 PANTHER BETA-GALACTOSIDASE RELATED 20 730 IPR001944 GO:0004553|GO:0005975
Vifa6g01054 852 Pfam Galactose binding lectin domain 747 826 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01054 Vifa-Chr6 350565987 350570226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01054 30 834 Glycoside Hydrolase AT2G16730 60.198 0.0 1037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01054 - - gmx:102663614 1325.84