Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01053 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCTTCATCTAGTCCTAAAACTCGTCCTAACAAGCGCTCTCGTCTTTCTTCTTCCACTTCTACGTCTTCCGCCACCGCAACAACCGCCGTCGCTACCACTCCCATTCGGTCTGTTAACACTCGTACACGTGCGTCCAGAAACAAAGAATCCTTACCAGCTAAGAATCTTCCTCCTATGGATTCCAACAATGAATCGTCCTCAGCTTCACGACGGGATCGTCGTGGAAAGAATTCGGAAAGGGATGGCTCCGATAAGGGAAAGGAGAAGGAGCACGATGTTAGGATTAGGGAAAGGGATGCGGAAAGAGGGCTGGCGTTGAATATGGAGACTGCTGCAGGGGATGAGGATGATAACGACAGTGACAGTGGTGCTGGGCTGTTGCATCAGAATTTAACATCTGCGAGTAGTGCACTCCAAGGGCTTCTTAGGAAACTTGGTGCTGGTTTGGATGATCTGCTCCCGTCATCCGGGATGGGTTCGTCCTCTCATCAGAATGGGAGGTTGAAGAAGATACTGTTTGGGCTACGGGCAGATGGGGAGGAAGGTCGACAGGTGGAGGCTTTGACGCAGCTTTGTGAAATGCTTTCTATTGGGACTGAGGATTCACTTAGTACTTTCTCTGTTGATTCGTTTGTGCCTGTCCTCGTTGGGTTGCTGAATCATGAGAGCAATCCTGATATCATGCTTCTTGCAGCAAGGGCGCTAACACATCTCTGTGACGTGCTCCCTTCGTCTTGTGCAGCTGTTGTGCATTATGGAGCCGTTTCAATATTCTGTGCGAGGTTGCTCACCATCGAGTATATGGATTTGGCCGAGCAGTCCCTTCAAGCTCTTAAGAAGATATCTCAGGAGCACCCAACTGCATGCCTAAGAGCTGGGGCTCTCATGGCCGTACTCTCTTATTTAGACTTCTTCTCAACTGGAGTTCAGCGTGTTGCTTTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGATTTTGTAATGGAGGCTGTTCCTCTTCTGACAAACCTCCTTCAGTACCATGATTCCAAGGTCCTGGAGCATGCCTCTGTTTGCTTGACTCGAATAGCTGAAGCATTTGCATCATCTTCGGATAAATTAGATGAATTATGCAATCATGGACTGGTAACACAAGCTGCATCCCTCATTTCAAACAGCAGTTCTGGAGGCGGACAAGCTTCTCTCAGTACGCCAACATATACCGGTTTAATACGACTTCTTTCAACTTGTGCAAGCGGGTCCCCTCTTGGAGCTAAAACTTTGTTGCTTCTTGGAATTAGTGGTATTCTTAAAGATATTCTCTCTGGTTCTGGAGTTTCTTCTAATACCTCTGTTTCTCCTGCATTAAGTAGGCCACCAGAGCAGATATTTGAGATTGTAAATCTGGCAAATGAGCTTCTCCCCCCATTGCCACAAGGGACTATTTCCCTCCCTACCAGCACCAACTTTGTGAAGGGGCCTGTTATTAAAAAGTCACCTGCTGGTAGTTCTGCGCAACAAGAAGACACAAATGGAAATCCTCCTGAGATATCTGCCCGCGAAAAGCTATTAAATGAACAGCCTGAGCTACTTAAGCAATTTGGGATGGATCTCCTCCCGGTTTTAATACAGATATATGGTTCTAGTGTCAATATACCTGTTCGGCACAAATGTCTTTCGGCCATTGGAAAATTGATGTATTTCAGCCCATCAGAGATGATCCAGTCTTTGTTAAGCATGACAAATATATCAAGTTTCTTATCTGGAGTCTTGGCATCAAAAGATCCACATGTATTGACACCTGCCTTGCAAATTGCTGAAATTCTAATGGAAAAGTTGCCCGAGACTTTCTCTAAGATGTTTATCAGAGAAGGTGTCGTTCATGCAGTGGACCTACTTATTTTGCCGGGAAATTCAACCAATGTCTCAACACAAGCATCTACTGCAGAGAAGGATACTGATTCTTTACCTGGAGCATCGTCTCGCGTTAGGCGTAATCGGCGACGCTCTGGCAACTCCAATCCCGATGGAAATCCTTTGGACGATATCAAGAGTCCTGTTTCAGTTAATGTTGGTTCACCTCCAAGTTCTGGAAATATTCCAACAGTAAATTCTAGTATCCGGTTATCTGTTAGCGCAGCTGCAAAAACTTTTAAAGATCAGTACTTTCCTTCGGATCCTGGGGCTGCTGAAGTGGGTGTTACAGATGATCTTTTGCATCTGAGAAATCTTTGCATGAAGTTAAATGCCGGTGTTGATGACCAAAGGACTAATGGTAAGGGGAAATCTAAAACTTCTGGATTTGGTCTGGAGGAGTGTTTAACTGGTGTCATATCTGAAATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCAACTTTTGAATTTATTGGTAGTGGTGTTGTTGCAACTTTGCTGAATTATTTGTCTTGTGGGTATTTCTCTAAAGATAAACCCTCAGAAACCCACCTGCCTAAGCTTCGCAAACAAGCACTTGCAAGATTTAAGTTATTTGTTACTGTTGCACTGCCTGCCACTATTGACAATGAGGATGTAACTCCTATGACTGTCTTGATTCAAAAGCTTCAAAATGCTTTGTCCTCAATGGAGCGTTTCCCTGTTTTGCTGAGTCAATCACCTAGGTCATCCAGTGGAAGTGCGCGCCTTTCCTCTGGACTAAGTGCATTATCCCAGCCCTTCAAATTGCGTCTTTGTCGAGCCCAGGGGGAAAAGTCACTTAAGGATTATTCAGGCAATGTTGTATTGATTGATCCATTAGCTAGTTTAGCAGCCATTGAAGATTTTCTTTGGCCTCGTATCCAGCGAAATGAATCTGCTCAGAAGTCCAATGTACCTGCTGGGAATTCTGAATCTGGGACAAGTCCTGTAGGAGCTGGTGTTCCACCTCCTTCTACCTCTACTCCATCCACTACCCGTCGTCATTCTACGAGATCGAGATCTTCTGCTAGTTTAGGGGATACCACCAGAAAAGAATTAACTCAAGATAAAACCTTGAGCTCATCTAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGCGGCAAGAGGACCTCAAACAAGGAATGCTGCACGCAGAAGAGCAGCTGTTGATAAGGATGTTCAAATGAAGCCTGCAAATGGGGATTCTACTTCTGAGGATGAAGATTTAGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTTATCGAAGATGATGATGATATTTCTGATGATGATGAAGATGATGACCACGAAGATATGCTGAGGGACGACTCACTTCCTGTTTGTGTACCTGACAAAGTACATGATGTGAAATTGGGAGACTCAGCTGAGGAGAGTACTGTTACTCCTGTAACTAACGATGGCCAGACTAATGCGGCTTCTGGTTCTAGTAGCAAAGTTGGTTCAGTCAGAGCATCAGACACTGCAGATTTTAAGAGTGGCTATTCTTCTAGCTCACGAGGTGCTATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGCAGAGGAATCAGGGGTGGCAGAGATCGGCAAGGGCGTCCATTGTTTGGTAGTTCTAATGATCCTCCGAAGCTAATATTCACTGCAGGCGGTAAACAACTCAACAGGCAGTTGACTATTTATCAAGCAGTTCAAAGACAGCTTGTACAAGATGAAGATGATGATGAGAGATTTGCTAGTAGCGACTTTATGTCGAGTGATGGAAGCAGGATGTGGGGTGATATTTTCATAATAAATTATCAGAAGGCAGATAGCCAAACAGATAGGGCTACCCCAGGAGGCCCAAGTTCTAACACTTCTAAATCTAGTAAATCTGGGTCTGTATCAAATTGCGGTGCTGAAGTCAAGTTGCATCAGACATCTTTAATCGATAGTATCTTGCTTGGAGAATTGCCGTGTGAGCTGGAGAAATCTAATCCCACATATGATATATTGGCTCTATTGCGTGTGCTGGAGGGTTTAAACCAGCTTGCACCTCGTTTGAGGGCCCAAGTGGCTACTGATAGCTTTGCTGAGGGAAAATTTTTGGATCTAGACGAGCTAGTTGTTGCCACAGGTTCCAAGGTTCCACCGGATGAATTTATAAGCAGCAAGCTTACTCCAAAATTAGCTAGACAGATACAAGATGCCCTTGCCCTATGCAGTGGGAGTCTCCCCTCATGGTGTTACCAGTTAACTAAGGCATGCCCTTTTTTGTTTCCATTTGAGGTCCGAAGACAGTACTTCTATTCAACTGCCTTTGGGTTATCTCGTGCATTGTATCGACTCCAGCAGCAGCAGGGTGCCGATGGTCATGGATCAACAAATGAAAGAGAGGTTAGGGTTGGAAGGCTGCAGCGCCAAAAGGTCCGTGTCTCTCGAAACCGCATTTTGGATTCTGCTGCTAAAGTGATGGAAATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAGGTTGGCACTGGCCTTGGTCCCACCCTTGAGTTCTATACACTTCTAAGTCATGACTTGCAGAAAGTTGGACTTCAGATGTGGAGATCGGGTTCTGATCAAATGGATATTGATGGAGATGAAAAGAAAAAGAAAAGCAGTGAAGGTAATATTGCTAGAGACGGGGAACTTGTTCAAGCTCCTCTTGGGTTGTTTCCTCGTCCCTGGCCTGCGAATGCCGAAGCATCAGAAGGTAGCCAGCTTTTTAAAGTGATTGAATATTTCAGACTTTTAGGCCGCGTAGTTGCTAAAGCACTTCAAGATGGACGTCTATTAGATTTGCCGTTATCTGTAGCCTTTTATAAGCTTGTTCTTGGTCAGGATCTTGATTTGCACGACATTCTTTACATTGATACTGAACTTGGGAAAACTTTGCAAGAGTTGAATGCCCTTGTTTGCCGGAAACATAATATAGAATCTATTGGTGGTGGTTATACTGGTACAGTAGCAAATTTGCATTACCGTGGAGCTCCGGTTGCAGATCTCTGTTTGGATTTTACCCTTCCTGGTTATCCAGATTACACTTTGAAGCCTGGGGATGAAATTGTCGACCTCAATAATCTAGAGGATTATATATCCATGGTTGTTGATGCCACTGTCAAAACTGGAATAACACGGCAACTGGAAGCCTTTAGAGCAGGGTTCAATCAGGTTTTTGATGTCTCATCTTTGCAAATATTTACGCCTCACGAATTGGATTATTTGCTTTGTGGCCGTCGGGAAATGTGGAAGACAGAGACACTAGCCGATCATATAAAATTTGACCATGGGTATACTGCCAAGAGCCCTGCAATAGTGAATTTACTTGAAATCATGGGAGAGTTCACACCGGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGAGCACCTAAGCTACCACCTGGTGGATTGGCTGTTCTAAATCCAAAATTAACGATCGTGAGAAAGCTCTCGTCTACCGCAGCTAATACTGCATCCAATGGGAATGGTCCTTCAGAAACAGCAGATGATGACTTGCCAAGTGTGATGACATGTGCAAATTACCTTAAGCTTCCTCCATATTCTACCAAGGAAATTATGCACAAGAAGCTAATGTATGCAATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5667 0.4456 METRSRKRAEASSAAPSSSSSSPKTRPNKRSRLSSSTSTSSATATTAVATTPIRSVNTRTRASRNKESLPAKNLPPMDSNNESSSASRRDRRGKNSERDGSDKGKEKEHDVRIRERDAERGLALNMETAAGDEDDNDSDSGAGLLHQNLTSASSALQGLLRKLGAGLDDLLPSSGMGSSSHQNGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSSDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNTSVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPTSTNFVKGPVIKKSPAGSSAQQEDTNGNPPEISAREKLLNEQPELLKQFGMDLLPVLIQIYGSSVNIPVRHKCLSAIGKLMYFSPSEMIQSLLSMTNISSFLSGVLASKDPHVLTPALQIAEILMEKLPETFSKMFIREGVVHAVDLLILPGNSTNVSTQASTAEKDTDSLPGASSRVRRNRRRSGNSNPDGNPLDDIKSPVSVNVGSPPSSGNIPTVNSSIRLSVSAAAKTFKDQYFPSDPGAAEVGVTDDLLHLRNLCMKLNAGVDDQRTNGKGKSKTSGFGLEECLTGVISEMLKELGKGDGVSTFEFIGSGVVATLLNYLSCGYFSKDKPSETHLPKLRKQALARFKLFVTVALPATIDNEDVTPMTVLIQKLQNALSSMERFPVLLSQSPRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLKDYSGNVVLIDPLASLAAIEDFLWPRIQRNESAQKSNVPAGNSESGTSPVGAGVPPPSTSTPSTTRRHSTRSRSSASLGDTTRKELTQDKTLSSSKGKGKAVLKPAQEAARGPQTRNAARRRAAVDKDVQMKPANGDSTSEDEDLDISPVEIDEALVIEDDDDISDDDEDDDHEDMLRDDSLPVCVPDKVHDVKLGDSAEESTVTPVTNDGQTNAASGSSSKVGSVRASDTADFKSGYSSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRPLFGSSNDPPKLIFTAGGKQLNRQLTIYQAVQRQLVQDEDDDERFASSDFMSSDGSRMWGDIFIINYQKADSQTDRATPGGPSSNTSKSSKSGSVSNCGAEVKLHQTSLIDSILLGELPCELEKSNPTYDILALLRVLEGLNQLAPRLRAQVATDSFAEGKFLDLDELVVATGSKVPPDEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFEVRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQMWRSGSDQMDIDGDEKKKKSSEGNIARDGELVQAPLGLFPRPWPANAEASEGSQLFKVIEYFRLLGRVVAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILYIDTELGKTLQELNALVCRKHNIESIGGGYTGTVANLHYRGAPVADLCLDFTLPGYPDYTLKPGDEIVDLNNLEDYISMVVDATVKTGITRQLEAFRAGFNQVFDVSSLQIFTPHELDYLLCGRREMWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAANTASNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMHKKLMYAINEGQGSFDLS 1888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01053 1888 SMART arm_5 343 381 IPR000225 GO:0005515
Vifa6g01053 1888 SMART arm_5 300 340 IPR000225 GO:0005515
Vifa6g01053 1888 SMART arm_5 217 258 IPR000225 GO:0005515
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 961 1011 - -
Vifa6g01053 1888 Gene3D Hect, E3 ligase catalytic domain 1759 1886 - -
Vifa6g01053 1888 Pfam HECT-domain (ubiquitin-transferase) 1518 1888 IPR000569 GO:0004842
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 84 122 - -
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 1273 1298 - -
Vifa6g01053 1888 Gene3D Hect, E3 ligase catalytic domains 1410 1650 - -
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 961 1169 - -
Vifa6g01053 1888 Gene3D - 176 493 IPR011989 -
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 658 718 - -
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 1130 1169 - -
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 1 122 - -
Vifa6g01053 1888 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1757 1887 - -
Vifa6g01053 1888 FunFam HECT ubiquitin protein ligase family protein KAK 179 493 - -
Vifa6g01053 1888 FunFam E3 ubiquitin-protein ligase UPL3 1411 1649 - -
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 516 530 - -
Vifa6g01053 1888 Gene3D - 537 664 IPR011989 -
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 10 64 - -
Vifa6g01053 1888 CDD HECTc 1470 1883 IPR000569 GO:0004842
Vifa6g01053 1888 ProSiteProfiles HECT domain profile. 1588 1888 IPR000569 GO:0004842
Vifa6g01053 1888 SMART hect_3 1481 1888 IPR000569 GO:0004842
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 514 533 - -
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 1069 1105 - -
Vifa6g01053 1888 SUPERFAMILY ARM repeat 186 653 IPR016024 -
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 1187 1212 - -
Vifa6g01053 1888 SUPERFAMILY Hect, E3 ligase catalytic domain 1462 1881 IPR035983 GO:0004842
Vifa6g01053 1888 MobiDBLite consensus disorder prediction 1106 1127 - -
Vifa6g01053 1888 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1888 IPR045322 GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01053 Vifa-Chr6 349834110 349843061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01053 K10590 - gmx:100783336 2975.27