Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01051 ATGGGTTTTTTCAGTACTATTTTTGGGATTTTCGGTTTCGGTTTCGGGATTTCAATTGGTCTCACTGTTGGTTACATTCTCTTCATTTACTTTCAGTCTACCAAAGTTGAGGATCCTGAAATTAAGCCACTGGTGGATCAAGATGCTGAGAGTTTGCAACGAATGCTACCTGAGATTCCTAATTGGATTAAAAATCCTGATTTTGATAGGGTTGATTGGCTTAATAAGTTTATAGAACTTATGTGGCCTTATCTTGAAAAGGCAATTTGCAAGACTGCTAAGAACATTGCGAAACCCATAATTGAAGAGCAGATTCCAAAATATAAAATTGATTCTGTTGAGTTTCAAACACTCACTCTAGGGTCCCTGCCCCCAACTTTTCAAGGAATGAAAGTTTACGTGACTGATGAAAAGGAGTTGATTATGGAGCCTTCTATAAAATGGGCTGGAAATCCTGATGTTACCATTGCTGTAAAGGCATTTGGGTTGAAAGCTACCGTTCAGGTTGTCGATTTGCAAGTTTTTCTTTTGCCTCGCATTACTTTGAAGCCTTTGGTTCCCAGCTTTCCTTGCTTTGCCAACATCTATGTTTCTCTCATGGAAAAGCCACATGTTGACTTTGGCCTAAAACTTATGGGGGCTGATCTTATGTCTATTCCTGTTGCCTACGGGTTTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATCTGTGGCCCAAAAACATGGAAGTTCAAATACTAGATCCGGCAAAAGCTTTGAGGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTGCATGCCATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGATCCTTACGTGAAACTAAAGTTTAATGACGATAAGATGCCATCAAAAAAGACTACTGTAAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTTAATTTGGTAGTCAAAGATCCAGAGACCCAGGTTTTAGAGCTCAATGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAGGATGGGTATGAATGCGATCACTTTAAAAGAAGTTTCTCCTGAAGAGACTAAACGTTTTACTCTGGACCTTTTAAAGACATTGGATCCCAATGACCCTCAAAATGAGAAATCACGAGGACAGATTGTTGTGGAATTGACTTATAAACCCTTCAACGAAGAGGAGATGGGCAAGGGCTTTGATGAGACACAGACAATACCTAAAGCTCCTGAAGGCACTCCAGCTGGTGGAGGTCTTCTTGTAGTTATAGTTCATGAAGCTCAAGATGTTGAAGGGAAGTACCACACAAATCCACATGTACGTGTTATTTTCAGAGGGGAAGAAAAAAAGACTAAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGATGAGTTCCAGTTTCCGGTAGAGGAGCCTCCCACCAATGACAAACTACATGTAGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGGAAACACTTGGTTACGTCAATATCAACCTCGGGGATGTCGTTTCTAACAAGAGAATCAATGAGAAATACCATCTTATAGATTCTAAGAATGGTCGCATCCAGGTAGAGTTGCAGTGGAGAACTTCATAA 1614 0.404 MGFFSTIFGIFGFGFGISIGLTVGYILFIYFQSTKVEDPEIKPLVDQDAESLQRMLPEIPNWIKNPDFDRVDWLNKFIELMWPYLEKAICKTAKNIAKPIIEEQIPKYKIDSVEFQTLTLGSLPPTFQGMKVYVTDEKELIMEPSIKWAGNPDVTIAVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLMGADLMSIPVAYGFVQELIKDQVANMYLWPKNMEVQILDPAKALRRPVGILHVKVLHAMKLKKKDLLGASDPYVKLKFNDDKMPSKKTTVKHKNLNPEWNEEFNLVVKDPETQVLELNVYDWEQVGKHDRMGMNAITLKEVSPEETKRFTLDLLKTLDPNDPQNEKSRGQIVVELTYKPFNEEEMGKGFDETQTIPKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPHVRVIFRGEEKKTKRIKKNRDPRWEDEFQFPVEEPPTNDKLHVEVVSTSSRNLLHQKETLGYVNINLGDVVSNKRINEKYHLIDSKNGRIQVELQWRTS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01051 537 PRINTS C2 domain signature 277 289 IPR000008 -
Vifa6g01051 537 PRINTS C2 domain signature 304 317 IPR000008 -
Vifa6g01051 537 PRINTS C2 domain signature 326 334 IPR000008 -
Vifa6g01051 537 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Vifa6g01051 537 ProSiteProfiles C2 domain profile. 399 518 IPR000008 -
Vifa6g01051 537 FunFam Extended synaptotagmin-2 419 536 - -
Vifa6g01051 537 Pfam C2 domain 419 520 IPR000008 -
Vifa6g01051 537 Pfam C2 domain 260 357 IPR000008 -
Vifa6g01051 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 393 IPR035892 -
Vifa6g01051 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Vifa6g01051 537 CDD SMP_SYT 60 248 - -
Vifa6g01051 537 CDD C2 262 362 - -
Vifa6g01051 537 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 534 IPR045050 GO:0008289
Vifa6g01051 537 FunFam Synaptotagmin-2 isoform A 255 410 - -
Vifa6g01051 537 Gene3D C2 domain 419 536 IPR035892 -
Vifa6g01051 537 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Vifa6g01051 537 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Vifa6g01051 537 Gene3D C2 domain 257 408 IPR035892 -
Vifa6g01051 537 SMART C2_3c 419 517 IPR000008 -
Vifa6g01051 537 SMART C2_3c 261 361 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01051 Vifa-Chr6 348591794 348598132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01051 255 516 Lipid Metabolism Gene Families AT3G61300 27.402 3.83e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01051 - - gmx:100803978 960.674