Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01036 ATGGATCTATTAGCCATCACTCTCACCACTCTTCTATTCCTCACTCCCAAAGGTATCTCCGGTTCTTCCTTCACATTTGTCAACAGATGCGATTACACAGTATGGCCAGGCATTCTCGCAAATGCCGGTAGCCCATCTCTCGGAAGCACCGGTTTCGAACTTCCACAACAAACCACTCGCTCATTCCAAGCTCCAGCCGGTTGGTCCGGCCGGTTCTGGGCCCGAACCGGCTGCAACTTCGACGGATCAGGCTCCGGTTCATGCCTCACCGGAGACTGCGGTTCCGGCATGGTAGAATGCAACGGCGCCGGAGCTGCTCCTCCCGCCACCCTCGCAGAGTTCACTCTCGGAACCATAGGACAAGATTTCTACGACGTGAGTCTTGTAGACGGTTACAACCTACCCATGATCGTTGAAGGTTCGGGTGGGTCCGGTATGTGTGAATCAACCGGCTGTACGTCGGATCTTAACCAGCAATGTCCAGCGGAGTTGAGAGCTTCAGATGGAAGCGCGTGTAAGAGCGCGTGCGAGGCTTTTGGTAGTCCCGAGTATTGTTGTAGCGGCGCGTATGGTTCACCGGCGACTTGTAGACCGTCTGTTTACTCGGAGATGTTTAAGGCTGCTTGTCCTAGATCGTATAGCTACGCTTACGATGATGCTTCAAGTACTTTTACTTGTACTGCTGCAGATTATACCGTTACCTTTTGTCCATCTTCTCCAAGTAAAAAATCTTCACAATATCCAACCCCAGTGAGCTCAACAACGTTACCAGGGACAGGGACAGTGATAGGGACTCCTGAGATTGGAACAGGATCCGAAGGTGGAGTGGAATACACGGGTACGGGTGCGGGTTCAGACACACCCATAGGCTATTCTGTTCCTGTTAATTCAGGGGCAGGATCTGGAGGAGAAACTATGCTTGCAGATGGGACATATTTAGCTGGATTAGCCATGGGAGATTCCTCTACAACAGCTTCCTCTGTGTTTCACTCTTTTGGCTTTTTGCTTGTTATGTTCTTGCTTTAG 1026 0.5097 MDLLAITLTTLLFLTPKGISGSSFTFVNRCDYTVWPGILANAGSPSLGSTGFELPQQTTRSFQAPAGWSGRFWARTGCNFDGSGSGSCLTGDCGSGMVECNGAGAAPPATLAEFTLGTIGQDFYDVSLVDGYNLPMIVEGSGGSGMCESTGCTSDLNQQCPAELRASDGSACKSACEAFGSPEYCCSGAYGSPATCRPSVYSEMFKAACPRSYSYAYDDASSTFTCTAADYTVTFCPSSPSKKSSQYPTPVSSTTLPGTGTVIGTPEIGTGSEGGVEYTGTGAGSDTPIGYSVPVNSGAGSGGETMLADGTYLAGLAMGDSSTTASSVFHSFGFLLVMFLL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01036 341 FunFam THAUMATIN-LIKE PROTEIN 1 22 237 - -
Vifa6g01036 341 MobiDBLite consensus disorder prediction 239 261 - -
Vifa6g01036 341 SMART tha2 24 237 IPR001938 -
Vifa6g01036 341 Gene3D Thaumatin 22 237 IPR037176 -
Vifa6g01036 341 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
Vifa6g01036 341 SUPERFAMILY Osmotin, thaumatin-like protein 24 238 IPR037176 -
Vifa6g01036 341 PRINTS Pathogenesis-related protein signature 227 236 IPR001938 -
Vifa6g01036 341 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Vifa6g01036 341 PRINTS Pathogenesis-related protein signature 84 113 IPR001938 -
Vifa6g01036 341 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Vifa6g01036 341 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Vifa6g01036 341 ProSiteProfiles Thaumatin family profile. 21 237 IPR001938 -
Vifa6g01036 341 PANTHER OS03G0233200 PROTEIN 10 237 IPR001938 -
Vifa6g01036 341 CDD TLP-PA 23 236 - -
Vifa6g01036 341 MobiDBLite consensus disorder prediction 239 272 - -
Vifa6g01036 341 Pfam Thaumatin family 28 237 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01036 Vifa-Chr6 341336618 341338037 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01036 4 245 Receptor kinase-like Gene Family AT5G38280 46.512 8.82e-76 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01036 - - cam:101493007 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01036 6 341336618 341338037 Vifa6g01036 6 341336618 341338037 ECH