LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g01032	ATGGAAATGGCAGCAGATAAAGTTGTGGAAACAGTTATAGTTGGAAACTATGAAGAAATGGAAAATGAAGGAAAGCCACAAGACATAAAATCCAAGTTATCAAACTTTTTATGGCATGGCGGTTCTGCTTATGATGCTTGGTTTAGTTGTGCTTCTAACCAGGTGGCTCAAGTTCTGCTTACGTTGCCATACTCATTTTCTCAGCTAGGAATGCTTTCTGGCATACTTTTTCAACTCTTTTATGGTTTACTTGGTAGCTGGACTGCTTACCTCATTAGCATACTCTATGTTGAATACAGAACAAGAAAAGAGAGAGAAAAAGTTAACTTCAGAAGCCATGTTATTCAATGGTTTGAAGTTCTTGATGGACTCCTTGGAAAGCACTGGAGAAACGTTGGTTTGGCCTTTAACTGCACATTTCTTCTGTTTGGATCTGTTATCCAACTTATAGCTTGTGCAAGCAATATATATTACATAAATGATAATCTAGACAAGAGGACTTGGACATACATATTCGGAGCATGTTGTGCAACCACTGTCTTTATTCCCTCATTTCACAACTACAGAATCTGGTCCTTTTTGGGTCTTGTTATGACCACTTACACTGCTTGGTATCTAACAATTGCTGCAATCCTTCACGGTCAGATGGAAGGAGTTAAACACTCAGGTCCAAACAAAATGGTTCTATATTTTACTGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGTGGAAATAATGCACGCTATGTGGAAGCCACAAAAGTTCAAAGCCATATATTTAATGGCTACCCTTTATGTTCTGACACTGACCCTTCCATCAGCAGTAGCAGTTTATTGGGCATTTGGTGACATGCTTCTAAATCACTCCAATGCTTTTGCTCTTCTCCCAAAATCACCTTTCCGTGACATGGCTGTCATTTTAATGCTCATTCACCAATTTATAACATTTGGATTTGCATGCACTCCATTATACTTTGTTTGGGAGAAAGCAATAGGTATGCATGAGTGCAAAAGTTTGTGCAAACGTGCATTGGTGAGGTTACCGGTGGTGATTCCAATTTGGTTCTTGGCTATTATTTTCCCTTTCTTTGGTCCCATCAATTCCACCGTTGGATCTCTCCTTGTCAGTTTCACTGTTTATATCATCCCCGCACTTGCATACATCTTCACCTTTAAATCGTCCTCCGCCCGACAGAATGCTGTGGAACAACCTCCCAAATTTGTTGGAAGATGGGTAGGAACATTTGTGATCAATGTATTTATAGTGGTGTGGGTCCTAATTGTGGGATTTGGATTTGGTGGGTGGGCCAGTATGGTGAATTTCATACACCAAATTGATACATTTGGACTCTTCACTAAGTGTTACCAATGTCTTCCTCCACCGTCCTCTATTCCAACCATGCCGCCGCCGCATCAGGTGAATGCCACCGCGCCTTCTCCTCATCACCACCACCACTGA	1473	0.4128	MEMAADKVVETVIVGNYEEMENEGKPQDIKSKLSNFLWHGGSAYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVNFRSHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLTIAAILHGQMEGVKHSGPNKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLMATLYVLTLTLPSAVAVYWAFGDMLLNHSNAFALLPKSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRALVRLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAYIFTFKSSSARQNAVEQPPKFVGRWVGTFVINVFIVVWVLIVGFGFGGWASMVNFIHQIDTFGLFTKCYQCLPPPSSIPTMPPPHQVNATAPSPHHHHH	490

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g01032	490	PANTHER	OS05G0424000 PROTEIN-RELATED	45	428	-	-
	Vifa6g01032	490	Pfam	Transmembrane amino acid transporter protein	39	432	IPR013057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g01032	Vifa-Chr6	339439694	339443028	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g01032	5	462	Organic Solute Cotransporters	AT2G21050	89.738	0.0	868

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g01032	K13946		-	gmx:100812002	937.562