Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01023 ATGCCAACGCCATCATCATTCCCAACTCGCAACTTCAAGCGCTTCAAACCCACCGATCTGTGCATCGTCAAACCCATCCTCTCTCCAAAATCCAGTCTCTCCGAAGCCGTTTCTTCTCTTGACCTTTTGCACCCCAAAGGCATTCGCTTACCCTCCAACGTTCTCGTCACTCTCTTGCGCCGTTGCTCTGATACCAAGTCGTACCGTGAGGGTAAGCTTGTTCACCTTCATTTGAAGCTTACTGGTTTCAAACGCCCCACCACTCTTATTGGTAATCATTTGATTCATATGTACTTCTGTTGCGGCGATTATGTTCATGCACGCAAGGTGTTTGATAAAATGGAGGTTAGAAATTTGTATTCTTGGAATAATATGCTTTCTGGGTATGTTAAATTGGGGATGATGAAACAAGCTAGGAGTATGTTTTATCAAATGCCTGACAAGGATTATGTGTCATGGAACACTATGGTGGTTGGTTATGCACACTGTGGGAGATTTAGTGAGGCTTTGAGGTTTTATGGAGATTTGAGGAGATTGTGTATTGGTTATAATGAGTTTACGTTTGCCGGTGTATTGATTATTTGTGTGAAATTGAAAGAATTTGAACTTTGTAGGCAGATTCATGGGCAGGTTTTAGTTGTTGGGTTTTTATCCAATGTGGTTGTTTCTAGCTCAATTGTAGATGCTTATGCAAAATGTGATAACATGGTAGATGCAAAGAGATTGTTTGATGATATGTCCGTGAGGGATATTCCTGCCTGGACGACGTTAGTTTCAGGGTATGCTTTATGCGGGGACATGGAATCAGCTGCCGAAATGTTTAGTCAGATGCCTAAGAAAAATTCGTATTCGTGGACTTCTTTGATTGGCGGTTATGCAAGAAATGGTATGGGTCATAAAGCTCTTGGAGTGTTTAGAAAGATGATCCAGCAAAAAGTTAGACCTGATGAATTTACTCTCAGTAACTGCCTGTTTGCCTGTGCTACTATTGCTTCACTGATGTTTGGTAAACAAGTACATGCATTTTTGGTGCGCAATAATGTCACACCTAATCCTGTTGTTGTAAGTGCTATTGTTGACATGTACGCAAAATGTGGAAGCATGGAGACCGCCTGGCAAGTCTTTAATTTCAGCGGAAATTTGCAAGATGTAGTGTTGTGGAACACCATGATATCAGCACTAGCTTACTATGGCTATGGTAATGACGCAGTTATGATGTTCAATGATATGCTGAAATCAGGAGTGAAGCCAAATAGGACCACCTTTGTTGCCATTCTAAATGCTTGTAGTCACTCTGGCCTTGTTCATGAAGGGCTTCAGTTTTTCAAGTCCATGAATATCGAGCATGGTGTTGTTCCTGACCTAGAACTCTATGCACACCTAATTGATCTTTTTGGTCGATCTGGATGTTTTAACGAGTCGATGAAGGATCTATTCATGATGGATTGTAAACCAGGGGACCGTGTTTGGTATTCTTTGCTTGGTGTATGCAGTTTGAATGGAAGTCTACGACTCGGCAGAGAAGTAACTGAATTCCTTATTAAATGGCAGCCTCAATCTTCTGTCGCTTATGTAGTACTTTCTAGTATATATGCTGCACTTTTGAAATGGGGATTGGTTGAAGAAGTAAGACATATTATGGATGAGAGACGCTTGAGGAAAGATCTGTCCATTAGTTGGGTTGAAATTGAAAATGAGGTCCATGCTTTCACTGGATCAGATGGATTGCACCCTTTGAAGGAAACATTATACTCAGCTTTGGGGCACTTAAATAACCAGATAGAAGACAATGCCCTACACCTAACTGAAAGATAG 1815 0.4121 MPTPSSFPTRNFKRFKPTDLCIVKPILSPKSSLSEAVSSLDLLHPKGIRLPSNVLVTLLRRCSDTKSYREGKLVHLHLKLTGFKRPTTLIGNHLIHMYFCCGDYVHARKVFDKMEVRNLYSWNNMLSGYVKLGMMKQARSMFYQMPDKDYVSWNTMVVGYAHCGRFSEALRFYGDLRRLCIGYNEFTFAGVLIICVKLKEFELCRQIHGQVLVVGFLSNVVVSSSIVDAYAKCDNMVDAKRLFDDMSVRDIPAWTTLVSGYALCGDMESAAEMFSQMPKKNSYSWTSLIGGYARNGMGHKALGVFRKMIQQKVRPDEFTLSNCLFACATIASLMFGKQVHAFLVRNNVTPNPVVVSAIVDMYAKCGSMETAWQVFNFSGNLQDVVLWNTMISALAYYGYGNDAVMMFNDMLKSGVKPNRTTFVAILNACSHSGLVHEGLQFFKSMNIEHGVVPDLELYAHLIDLFGRSGCFNESMKDLFMMDCKPGDRVWYSLLGVCSLNGSLRLGREVTEFLIKWQPQSSVAYVVLSSIYAALLKWGLVEEVRHIMDERRLRKDLSISWVEIENEVHAFTGSDGLHPLKETLYSALGHLNNQIEDNALHLTER 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01023 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 453 IPR002885 -
Vifa6g01023 604 Gene3D Tetratricopeptide repeat domain 438 577 IPR011990 GO:0005515
Vifa6g01023 604 Gene3D Tetratricopeptide repeat domain 149 249 IPR011990 GO:0005515
Vifa6g01023 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Vifa6g01023 604 FunFam Pentatricopeptide repeat-containing protein At2g21090 198 332 - -
Vifa6g01023 604 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 353 580 - -
Vifa6g01023 604 NCBIfam pentatricopeptide repeat 225 252 IPR002885 -
Vifa6g01023 604 NCBIfam pentatricopeptide repeat 385 418 IPR002885 -
Vifa6g01023 604 NCBIfam pentatricopeptide repeat 120 150 IPR002885 -
Vifa6g01023 604 NCBIfam pentatricopeptide repeat 421 454 IPR002885 -
Vifa6g01023 604 NCBIfam pentatricopeptide repeat 151 179 IPR002885 -
Vifa6g01023 604 NCBIfam pentatricopeptide repeat 253 280 IPR002885 -
Vifa6g01023 604 NCBIfam pentatricopeptide repeat 283 317 IPR002885 -
Vifa6g01023 604 Pfam PPR repeat 354 376 IPR002885 -
Vifa6g01023 604 Pfam PPR repeat 92 118 IPR002885 -
Vifa6g01023 604 Pfam PPR repeat 151 179 IPR002885 -
Vifa6g01023 604 Pfam PPR repeat 120 148 IPR002885 -
Vifa6g01023 604 Pfam PPR repeat 224 249 IPR002885 -
Vifa6g01023 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Vifa6g01023 604 Pfam PPR repeat family 280 328 IPR002885 -
Vifa6g01023 604 Pfam PPR repeat family 383 430 IPR002885 -
Vifa6g01023 604 Gene3D Tetratricopeptide repeat domain 338 437 IPR011990 GO:0005515
Vifa6g01023 604 Gene3D Tetratricopeptide repeat domain 250 337 IPR011990 GO:0005515
Vifa6g01023 604 Gene3D Tetratricopeptide repeat domain 22 148 IPR011990 GO:0005515
Vifa6g01023 604 Coils Coil 591 604 - -
Vifa6g01023 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 280 IPR002885 -
Vifa6g01023 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Vifa6g01023 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 31 147 IPR046960 GO:0003723|GO:0009451
Vifa6g01023 604 FunFam Pentatricopeptide repeat-containing protein At3g49710 60 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01023 Vifa-Chr6 335381917 335383731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01023 54 595 Glycoside Hydrolase AT3G49170 29.121 4.33e-77 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01023 - - pcin:129297573 780.4