Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01013 ATGATTGACTCAAATCCACCACTCTTGAACCATTATGGAGCACTTTTGAAAAATTCAGATGAACCTCAAAAGTCTAGAAGTTTCAATGATCAAGATAATAGTAATACTGTGGTGGATACATGTGAACTACCTTTGATAGACCTTAATGGTCTTAAAAGCTGTAATGTAAGAGAAAGAATGGCTTGCACTGCAGCAATATGCAAGGCAGCATCAGAATGGGGATTTTTCCAAGTGATAAACCATGGTATAAACCCTGACCTACTAAGAAATATGAAGGAGGAGCAAATGAAGCTGTTTAGGGTACCCTTTGAGAAGAAGGTCACTTGTGGACTTCTAAACAATCCATACAGGTGGGGGACACCAACAGCTACTAGTTTAAATCACTTTTCATGGTCAGAAGCTTTCCACATTCCTCTCACCATGATTTCAGAAGCAGCTTGCTGGGGTGAATTCAGTTCTCTAAGAGAAGCAATAAATGAGTTTGCACCAGCTATGCTAGAAGTGTCCAGGCTACTGGCAGGTATTCTAGCAGAAAACTTGGGCCACCAGACAGATGCAGTTGAAAAACTCTGCGATGCAAGCACATGCTTTCTGAGATTGAATCACTATCCTTCCTGTCCAAAATCTAAAGAAGAAATTTTTGGATTAGTACCTCACACTGACAGTGATTTCCTCACAATCCTTTATCAAGATCAAGTCGGTGGACTTCAACTGATGAAAGATTCCAAATGGGTCGCTGTAAAACCAAATCCAGATGCTCTTATTGTTAACATTGGAGATCTTTTCCAGGCCTGGAGTAATGATGAGTACAAAAGTGTAGAGCACAAGGTTGTGGCGAACAACAAAGTGGAAAGATACTCCATTGCATACTTCCTATGTCCTTCTTACACTACTATGATAAGTGGCTGCAAGGAGCCTTCAACATATAGGAATTTCACCTTTGGAGAATATCGACACCAAATTCAAGAAGATGTCAAGAAAATAGGACACAAAATAGGGCTATCAAAGTTTCTTCGTAAAGGCATGTACACGACAACCACCGTTTAG 1047 0.4021 MIDSNPPLLNHYGALLKNSDEPQKSRSFNDQDNSNTVVDTCELPLIDLNGLKSCNVRERMACTAAICKAASEWGFFQVINHGINPDLLRNMKEEQMKLFRVPFEKKVTCGLLNNPYRWGTPTATSLNHFSWSEAFHIPLTMISEAACWGEFSSLREAINEFAPAMLEVSRLLAGILAENLGHQTDAVEKLCDASTCFLRLNHYPSCPKSKEEIFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVKPNPDALIVNIGDLFQAWSNDEYKSVEHKVVANNKVERYSIAYFLCPSYTTMISGCKEPSTYRNFTFGEYRHQIQEDVKKIGHKIGLSKFLRKGMYTTTTV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01013 348 Gene3D - 15 327 IPR027443 -
Vifa6g01013 348 SUPERFAMILY Clavaminate synthase-like 35 322 - -
Vifa6g01013 348 Pfam non-haem dioxygenase in morphine synthesis N-terminal 43 137 IPR026992 -
Vifa6g01013 348 Pfam 2OG-Fe(II) oxygenase superfamily 197 294 IPR044861 -
Vifa6g01013 348 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 192 294 IPR005123 -
Vifa6g01013 348 FunFam Gibberellin 2-beta-dioxygenase 8 41 331 - -
Vifa6g01013 348 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 43 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01013 Vifa-Chr6 331988436 331990991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01013 22 317 Glycosyltransferase AT5G59530 30.449 5.58e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01013 K04125 - gmx:100819653 597.43