Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00987 ATGACAAATTCTTGTGATTTACAAATCAAAATTAATGGTCAGCAGATATTTCTTTTGAAAGAGAAGATTATATCAAAATACTGTGGAAAGGTGAAGAAAATCTTGAATCATCAAAAGAGAAGATGTCATGTGAAGGAGATGGGAATCAGGGTCAATGATTTTCCTGGAGGCTCAGATGGATTTGAGCTAGTTTCAAGGTTTTGTTACAACAATGGCAAAATACCAATAGATGTATCTAATGTGTCTCTTCTTCATTGTTGTGCTATTTATCTTGGAATGACTGAGGAAGTTTTCGACAACAATCTATTGCAACAAACACAAACTTTTCTTGAGGGAATCCATTACTGGAAATGGAATGACATAGTTTTAAGTCTAGTGAGTTGTGAAATGTTTTATGAATATGCAGATTGTTATGGTCTCTTGGAGAAGATCATTCATGCAGTGTTAATAAAGATTGTGCGAAATTCAGATGCAAACCTCAATACTTCCTTCACCTCTTTATCGTCGTCATCACTGTCGTCGTCGTCAACACCGTCTTCACCGGAAAGCAATTATGCCAAGAGATTTTCTTCTTCAACACAAACTACATCAGAAAAAGCCAAGTCGAGTTTGACAAGCAAAGCATGGTGGTTTGAAGATTTGGAAACATTACCACCAAAGATAATTGAGAAACTCTTTCGGTGCATTGAATCATATAAAGATGATAACAACAGTTTAATCTTTACAAGATTTCTGTTGCAATATCTGAAAACAGCTACTCAAACAAGAAACGCGGATTACAGAAACAGCAGCGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGAGTCATATTTGTTGAGAGATTGATTGGTGGGATGCTTGAACAAGCAACACTGGATGATCTTTTGGTGTCAGGGCAAGATATGGGGATCTATTATGATGTTAACTTGGTGATAAGATTGGTTAGACAATTTGTTGGTACCAATGGGTATGATGGAATGTGTTTACAGAAAATGAAAAGGGTTGGTAGATTAATCGACAAGTATTTGAGAGAGATATCACCTGATCAGAATCTCAAGATCTCGAAATTTCTTGGAGTTGCAGAATGTTTGCCTGACACTGCAAGGGATTGCTTTGATGGGATCTACAGAGCCATTGATATCTATCTTGAGTCTCATCCAAATGTCCCATTTGAGGAAAGATCGAGATTGTGTAAATGTCTTAACTACAGTAAACTCAGCTTTGGAGCTAGTAAAGATCTTGCCAAGAACCCCAGAATACCTCCAACGGTTGCAATGCAGGCACTTATTTCTCAACAAACGAAAATTCCAACAACCAACTTTGTAACCGAGAGTCCACGAAAAAGCCATTCGCAAATAGTTCTGTATAATCAAGGTAGCATTGACAGCTTTTCTCAAGAGAAAAAACACATGAAACTAAACCTGGAGACATTGAAATGTAAGACAGTAGAAGTAGAGAAATTAGAAGAAATGAATGGTCAGATTTCCAATATGTTTAGCCGTAATGTCTTGCTCACTCCTGCTCGTGCTAGAGCCTCGCCAAGATATTGTTGA 1557 0.3751 MTNSCDLQIKINGQQIFLLKEKIISKYCGKVKKILNHQKRRCHVKEMGIRVNDFPGGSDGFELVSRFCYNNGKIPIDVSNVSLLHCCAIYLGMTEEVFDNNLLQQTQTFLEGIHYWKWNDIVLSLVSCEMFYEYADCYGLLEKIIHAVLIKIVRNSDANLNTSFTSLSSSSLSSSSTPSSPESNYAKRFSSSTQTTSEKAKSSLTSKAWWFEDLETLPPKIIEKLFRCIESYKDDNNSLIFTRFLLQYLKTATQTRNADYRNSSEYAALAETAAYGVIFVERLIGGMLEQATLDDLLVSGQDMGIYYDVNLVIRLVRQFVGTNGYDGMCLQKMKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDTARDCFDGIYRAIDIYLESHPNVPFEERSRLCKCLNYSKLSFGASKDLAKNPRIPPTVAMQALISQQTKIPTTNFVTESPRKSHSQIVLYNQGSIDSFSQEKKHMKLNLETLKCKTVEVEKLEEMNGQISNMFSRNVLLTPARARASPRYC 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00987 518 ProSiteProfiles NPH3 domain profile. 280 436 IPR027356 -
Vifa6g00987 518 MobiDBLite consensus disorder prediction 166 191 - -
Vifa6g00987 518 Coils Coil 462 482 - -
Vifa6g00987 518 PANTHER OS12G0117600 PROTEIN 281 488 IPR043454 -
Vifa6g00987 518 Pfam NPH3 family 280 411 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00987 Vifa-Chr6 329640693 329642603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00987 18 385 EF-hand Containing Proteins AT2G47860 24.752 1.19e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00987 - - gmx:100808259 729.939