Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00905 ATGGCAGCTTCTTCGTTGTTCCGCGTTATTCAGAGAGGTTCGTATGCTGCTACCTCGTTTTTGGTCTCTCCCAGGTTAGTTGGGAGGGGTCAATTATACTCTATTGGTTCTCCATTGAGGGGTTGTGTGCCTTTTGAGAAGAAAGGTTATTGGTGGAGTTTGAGGGAGTTGAGTTATGGGAAGGTTAATCTTGTGATAAGAGATGGGAAGACAAAGTTTGAGACTCATGAGGTTGAGGCTCCAAGGAAAGATAAGTGGAAGACTAAGAAGAGGTTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAGGAAAGCGGCGAATAGGAGAGATCCTCGTCGGCTTGGCGTTAAAGGGAAGAAGAAGAAGCACAAGTTTGCTAGTCCTGAAGAGAGAATCAAGTTCAAGATTGACAATGCGAGAGTCAAAGAAGCGTTGCTCATTGAAAGACTCAAACGATATGAAGTTGCTAAAGCTCATGGTCCTGTTGTAAAACCAGACGGGTTGACAGGGGAGGAACGGTTTTATCTGAAGAAAATGGCTCAGAAGAGTTCTAACTATCTACAAGTTGGAAGAAGAGGATTATTTGGAGGGGTTATTCTCAATATGCATATGCATTGGAAGAAACATGAGACTGTTAAATGCATATGCAAGCCTTGTAAACCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGATTGAGTGGCGGTATTCCAATTCACATAATTGGTGATGACACGATAATATTTTATCGAGGAAAGAACTATATACAACCTGAGGTTATGTCACCGGTAGATACATTGTCCAAGAAAAAGGCACTTGAAAAGTCAAAGTATGAGCAATCACTTGAGTCAGTGAGACGCTTCATTGCTATTGCGGAGAAAGAATTGGAGCTATATCACAGACACGTTGCACTTTATGGTGACCCTAGCAACCGCAATCCCTTATCTATACTCGACGGTCCAAGTGGAAGCTTCAACGAAAAGAGGAATCGTGATGAAAAGAATCTTGACTCGAGTAGCTATTATCTTTCAGAAACAGAAGCAGATTCCTCACAGACGGAGCTATCAGAATCCGAATATAACTTTGAAAATGGAAACTTGTCAACGAGTGAATCAGATTCTGAAGAAGAAGAAGAAGACGACACCATGTTGGGTTCAGATGATGATGATGATGAAGAAAGAGAAGTTTATTATACTAAAATGAATGGTCAAAGTGTATGCTCCACCACAGGTTCATCATCAATATCTAAACATACCCATCATTTAAAGAGCTGCATCAAGTAA 1287 0.4134 MAASSLFRVIQRGSYAATSFLVSPRLVGRGQLYSIGSPLRGCVPFEKKGYWWSLRELSYGKVNLVIRDGKTKFETHEVEAPRKDKWKTKKRLKMQRKREKEKRKAANRRDPRRLGVKGKKKKHKFASPEERIKFKIDNARVKEALLIERLKRYEVAKAHGPVVKPDGLTGEERFYLKKMAQKSSNYLQVGRRGLFGGVILNMHMHWKKHETVKCICKPCKPGQVHEYAQELARLSGGIPIHIIGDDTIIFYRGKNYIQPEVMSPVDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYHRHVALYGDPSNRNPLSILDGPSGSFNEKRNRDEKNLDSSSYYLSETEADSSQTELSESEYNFENGNLSTSESDSEEEEEDDTMLGSDDDDDEEREVYYTKMNGQSVCSTTGSSSISKHTHHLKSCIK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00905 428 Coils Coil 89 109 - -
Vifa6g00905 428 MobiDBLite consensus disorder prediction 402 420 - -
Vifa6g00905 428 Pfam CRS1 / YhbY (CRM) domain 168 252 IPR001890 GO:0003723
Vifa6g00905 428 ProSiteProfiles CRM domain profile. 166 263 IPR001890 GO:0003723
Vifa6g00905 428 MobiDBLite consensus disorder prediction 86 103 - -
Vifa6g00905 428 SMART CRS1_YhbY_2 168 252 IPR001890 GO:0003723
Vifa6g00905 428 MobiDBLite consensus disorder prediction 311 428 - -
Vifa6g00905 428 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 59 422 IPR040286 -
Vifa6g00905 428 MobiDBLite consensus disorder prediction 77 122 - -
Vifa6g00905 428 SUPERFAMILY YhbY-like 168 262 IPR035920 -
Vifa6g00905 428 MobiDBLite consensus disorder prediction 340 370 - -
Vifa6g00905 428 MobiDBLite consensus disorder prediction 371 395 - -
Vifa6g00905 428 Gene3D - 168 266 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00905 Vifa-Chr6 307124741 307127035 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00905 - - psat:127100837 648.277