Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00890 ATGGGAATCTCAACCCATCTTTTCAACCTCTTGCTTTTCATTCTATTAACCTCTCATTCATCCTTTGCAGAAGTCTTTTTCGAAGAAAAATTCCAAGATGGGTGGAAAAGTCGTTGGGTTTTGTCTGATTGGAAAAGGAGTGAAGGAAAAGCAGGCACCTTTAAGTATACTGCTGGAAAATGGCCTGGAGATCCTGATGACAAAGGTATTCAGACATATAATGATGCCAAGCATTTTTCCATATCTGCAAAGATACCAGAATTGACCAATGAGAACAGAACTTTGGTGCTTCAGTATTCTATTAAGTTTGAGCAGGATATTGAATGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTTAATCAGAAGAAGTTTGGCGGTGATACTCCTTATAGTTTGATGTTTGGACCGGATCTATGTGGCACACAGACAAAGAAGCTCCATGTTATATTGTCATACCAGGGGCAGAATTATCCCATTAGAAAGGATCTGGAGTGTGAAACAGACAAATTAACTCATTTCTATACATTCATTCTAAGGCCTGATGCCTCTTATAGTGTCCTTGTCGATAATCGAGAAAGAGATTCGGGAAGCATGTACACAGATTGGGACATCCTCCCTCCAAGGAAAATCAAAGATGTCAAGGCAAAAAAGCCAGCAGACTGGGATGATAGAGAATACATTGAGGATCCTAATGATGTCAAACCAGAGGGATATAATTCAATTCCAGCTGAAATCCCCGATCCAAAAGCCAAGAAGCCTTTTGACTGGGATGATGAAGATGATGGACTATGGAAAGCCCCAAAAATTCCTAATCCAGCATACAGAGGACCGTGGAAACGGAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGATTCCTTGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTGCTGAAACCAATTAAGTATGTCGGCATTGAAGTGTGGCAGGTGAAGGCCGGCTCGATTTATGACAACATCTTAATTTGTGACGACCCACAGTATGCAAAGCAAGCTGTGGAAGAATATATGATTAATAATAGAGAGGCCGAAAAAGAAGCTTTTGAAGAAGCGGAGAAAGAAAGAAGGGCTCGAGAAGAAGAGGAGGCACAAAGGGCAAGAGAAGAAGGCGAAAAGAGGAGGAGAGAGAGGGGCAGTAGATACGGAGATAAGAGGCCCCGTAGAAGGCCAGATCCCCACGAATACATGGACGATTATGAACATGATGAACTTTGA 1260 0.4159 MGISTHLFNLLLFILLTSHSSFAEVFFEEKFQDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGIQTYNDAKHFSISAKIPELTNENRTLVLQYSIKFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDLCGTQTKKLHVILSYQGQNYPIRKDLECETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYNSIPAEIPDPKAKKPFDWDDEDDGLWKAPKIPNPAYRGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIYDNILICDDPQYAKQAVEEYMINNREAEKEAFEEAEKERRAREEEEAQRAREEGEKRRRERGSRYGDKRPRRRPDPHEYMDDYEHDEL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00890 419 Coils Coil 348 391 - -
Vifa6g00890 419 MobiDBLite consensus disorder prediction 359 412 - -
Vifa6g00890 419 ProSitePatterns Calreticulin family signature 1. 102 117 IPR018124 GO:0005509
Vifa6g00890 419 PIRSF Calreticulin 3 419 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 MobiDBLite consensus disorder prediction 359 419 - -
Vifa6g00890 419 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 222 IPR013320 -
Vifa6g00890 419 Gene3D Calreticulin/calnexin, P domain 209 310 IPR009033 GO:0005509|GO:0005515
Vifa6g00890 419 SUPERFAMILY P-domain of calnexin/calreticulin 205 320 IPR009033 GO:0005509|GO:0005515
Vifa6g00890 419 PANTHER CALRETICULIN AND CALNEXIN 9 384 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 Pfam Calreticulin family 264 337 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 Pfam Calreticulin family 27 261 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 PRINTS Calreticulin signature 130 146 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 PRINTS Calreticulin signature 318 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 PRINTS Calreticulin signature 285 304 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 PRINTS Calreticulin signature 247 269 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 PRINTS Calreticulin signature 104 122 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 PRINTS Calreticulin signature 219 232 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vifa6g00890 419 FunFam Calreticulin 209 310 - -
Vifa6g00890 419 ProSitePatterns Calreticulin family signature 2. 134 142 IPR018124 GO:0005509
Vifa6g00890 419 MobiDBLite consensus disorder prediction 227 246 - -
Vifa6g00890 419 Gene3D - 24 379 - -
Vifa6g00890 419 FunFam Calreticulin 1b 24 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00890 Vifa-Chr6 304799690 304806906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00890 6 345 Miscellaneous Gene Families AT5G61790 34.500 6.29e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00890 K08057 - gmx:100802428 719.924