Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00880 ATGGCTGTCAACGACGCCGGTCAATCTCACAAAGCTCACAGGACCCGTCAAGCCGGTCCCAAGAAGAAGATCAAATCTAAGAAGAAGCACAATGCCGATGACGGCCAGATTATGCAAAACCCCAAGGCTTTCGGTTTCTCCTCATCCAAAAAAGTCAAGCGATTACAATCACGCGCTGTCGAGAAAGAACAGCGCCGCCTTCATGTTCCCATCATTGATCGCACTTACGGTGAAGCTCCTCCTTTCGTCATTGTCGTGCAGGGTCCTCCCGGGGTTGGAAAGTCACTTTTGATTAAGTCTTTGATTAAGCATTATACAAAGCATAACTTGCCTGAAGTTCGAGGTCCAATTACAATTGTATCAGGAAAACAAAGGCGTCTGCAGTTTGTGGAGTGTCCGAATGACATCAATGGCATGATAGATGCAGCCAAGTTTGCTGATCTAGCACTTCTTCTTATTGATGGAAGTTATGGTTTTGAAATGGAAACATTTGAATTTCTTAATATTATGCAAGTTCATGGGTTCCCTAAGGTCATGGGGGTTCTTACTCATCTTGATGGATTCAAGGATGTTAAAAAGTTGAGGAAAACAAAACAACGACTCAAACACCGGTTTTGGACTGAAATATATGATGGAGCTAAATTGTTTTACTTATCAGGCCTTATTCATGGAAAGTATGTCAAGCGTGAAGTTCACAATCTCGCCCGATTCATATCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCTCATCCCTATGTTTTGGTGGATCGTTTTGAAGATATCACTCCTCCTGAACAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACTCTTTATGGCTATCTTAGAGGTTGTAATATGAAAAAGGGCAATAAGGTGCACATAGCTGGAGTGGGCGATTATGGTTTAACCCATGTAACTGGTTTACCCGATCCATGCCCTCTACCTTCTGCTGCCAAAAAGAAAGGACTGCGTGATAAAGAGAAGTTATTTTATGCTCCCATGTCTGGCGTTGGGGATCTTTTGTACGACAAAGATGCTGTGTACATAAATATTAATGACCACTTTGTTCAATTTTCAAAAGCTGATGATGAAAACACTGCTTCGACAAGCAAAGGAAATGAAAGAGATGTAGGAGAGGTTCTGGTGAAATCACTTCAGAATACCAAATACTCAATCAATGAAAAGCTAGAGAGTAGCTCTATCAATCTTTTTAGGCAAAATTCAATAGACCATGCTGTAGAGGAGGATGGAGAACTAGAAACTTTGGATAGTGGTGAAGATAATAATGGAGTGGATTCAGATGGTTCAGAATCATCTGATCAGGATGAAGCTGATGAGGCTAATGGTTCTCTTGATGATGTCAATGCAACAGATGGTATAGTTACAAACAGAGAGCACTTAAATGAACAGATGGAGTTTCACAATGGAAGACAAAGGAGAAAAGTAATCTTTGAAAATGATGTTGGTCAAAGTGATCTAGTGGATTCAGAAGAAGATGATGAAGAAGAGGAAGTGGAAGAGGATGGTGCTGCCGACGATAATGAGGAATCTTCCGATTCAGAATCTTCCGATTCAGAATCTTCAGAAGGGAACGAAGATGACAATGACGATGACACACATGATGACATGGGAAATGTGTCAAAGTGGAAGGAATCATTGTCAGAAAGAACTCACGCCTTAAAAGCTCCTAGTTTGACGCAACTTGTGTATGGGGAATCTACTAATAATTCGACTTCTATGAATGAAGAGAATGATAGTAGCGATGATGAAGATGACGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAATATGAGAGATGGACCAGATGATAGTATGGTCGATGCTGAGGATTGTTCCAAGTGTGCCAAACTTGTGAGCCGGAAATGGAATGAGAAAGATCAAGCGGAGATTCGCAACCGCCGTTTTGTGGCTGGAAATTTGGCAAAAGCTGCACTCGGAAATGCACTGCAAAAACCTAATGCTGAAGAGGATGATGAAGGTGTCTATGGTGACTTTGAAGATTTAGAAGCAGGAGAAAACAATGATATTTATCAGACAGATGCAGTAGCAACAACTCATAAGGGAGTTGATTCAGAAGCTGAGGAGCGGAGGCTTAAGAAACTTGCTCGTCGTGCAAAATTTGATGCTCAATATAATAGTGACCCTGAGACACCGGAGGAAGATACTGTCAATGAAAATGAAGCCCAGTTCCATCGTGATCAACCCACTGAAAGTAACTATTTTGACAAGTTAAAGGAGGAGATTGAGCTTCGAAAGCAAATGAATATTGCTGAACTTGAGGATCTTGACGAAGATACCAGAATAGAGGTAGAAGGCTTCCGAACAGGGACATACCTAAGATTGGAGGTTAATAATGTTCCATATGAAATGGTTGAACACTTTGATCCCTACCATCCAATATTGATTGGAGGGGTTGGTTTAGGAGAGGAAAGTGTTGGATACATGCAGGCCAGGTTAAAGCGGCATAGGTGGCACAAGAAAGTCCTGAAAACTAGAGACCCAATTATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACACCAGTTTATGCTATTGAGGATCTTAATGGAAGACATCGAATGCTAAAATACACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCACCTCCCAACACTGGAATAGTTGCTGTTCAGACTTTATCAAACAAGCAGGCAACTTTTAGGATTACCGCAACTGCAGTTGTTGTTGAGTTTAATCATGCTGCCAGGATAGTGAAGAAAATCAAAATGGTTGGTTATCCATGCAAGATATTCAAGAAAACAGCTCTTATAAAGGAGATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGTGCGGCTATTCGAACAGTCAGCGGGATTAGGGGGCAGGTCAAGAAGGTTGCAAAAGTAGAGATAGGTAACAAGCCAAAAAGCAAGGGCGGGCAGCCAAAAGAAGGAATTGCCAGGTGCACTTTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGAGCATGGACTCAAGTTGAAGTTCCCCAGTTTTATAATCCATTGACAACAGCATTGCAGCCTCGTGACCAGACATGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGAACTCAATCTCCCTATACCTGTAAAAAAAGATTCTCTTTATGAGAAAATTGAAAGGAAACCTAGAAAGTTCAATCCATTGGTGATTCCCAAGTCTCTACAGGCAAATCTTCCCTTTGAATCAAAACCTAAGCACACACCCAAGCAAAAAAGGCCGTTGCTTGAAGATAGAAGGCAAAAGGGTGTTATCATTGATCCTCGCGAGAAAAAAATTCATGCTCTTGTTCAACACCTTCAGTTAGTGAAAGGTGAAAAGATGAAAAAGCGGAAGTTTAAGGAAGGAGAGAAAAGAAAAGCTAATGAAGCGTTGAAAGCAAAAGAGGAGGAATTGTCGAAAAAGCGGCGGAGAGAGGAAAGACGAGAGAAATACCGAAAAGATGACAAGCTGAACAAGAAAATTCGGAGAGCATAG 3573 0.4125 MAVNDAGQSHKAHRTRQAGPKKKIKSKKKHNADDGQIMQNPKAFGFSSSKKVKRLQSRAVEKEQRRLHVPIIDRTYGEAPPFVIVVQGPPGVGKSLLIKSLIKHYTKHNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNIMQVHGFPKVMGVLTHLDGFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEQVHANNKCDRKVTLYGYLRGCNMKKGNKVHIAGVGDYGLTHVTGLPDPCPLPSAAKKKGLRDKEKLFYAPMSGVGDLLYDKDAVYININDHFVQFSKADDENTASTSKGNERDVGEVLVKSLQNTKYSINEKLESSSINLFRQNSIDHAVEEDGELETLDSGEDNNGVDSDGSESSDQDEADEANGSLDDVNATDGIVTNREHLNEQMEFHNGRQRRKVIFENDVGQSDLVDSEEDDEEEEVEEDGAADDNEESSDSESSDSESSEGNEDDNDDDTHDDMGNVSKWKESLSERTHALKAPSLTQLVYGESTNNSTSMNEENDSSDDEDDDFFKPIEEVKKQNMRDGPDDSMVDAEDCSKCAKLVSRKWNEKDQAEIRNRRFVAGNLAKAALGNALQKPNAEEDDEGVYGDFEDLEAGENNDIYQTDAVATTHKGVDSEAEERRLKKLARRAKFDAQYNSDPETPEEDTVNENEAQFHRDQPTESNYFDKLKEEIELRKQMNIAELEDLDEDTRIEVEGFRTGTYLRLEVNNVPYEMVEHFDPYHPILIGGVGLGEESVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDLNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQTLSNKQATFRITATAVVVEFNHAARIVKKIKMVGYPCKIFKKTALIKEMFTSDLEVARFEGAAIRTVSGIRGQVKKVAKVEIGNKPKSKGGQPKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDQTWKGMRTVAELRRELNLPIPVKKDSLYEKIERKPRKFNPLVIPKSLQANLPFESKPKHTPKQKRPLLEDRRQKGVIIDPREKKIHALVQHLQLVKGEKMKKRKFKEGEKRKANEALKAKEEELSKKRRREERREKYRKDDKLNKKIRRA 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00880 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 218 IPR027417 -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 488 620 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 1097 1112 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 14 28 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 1138 1190 - -
Vifa6g00880 1190 CDD BMS1 43 272 IPR037875 GO:0005525
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 423 460 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 600 620 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 1 43 - -
Vifa6g00880 1190 Coils Coil 758 778 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 720 751 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 571 586 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 737 751 - -
Vifa6g00880 1190 Pfam AARP2CN (NUC121) domain 230 315 IPR012948 GO:0005634|GO:0042254
Vifa6g00880 1190 PANTHER RIBOSOME BIOGENESIS PROTEIN 7 508 IPR039761 GO:0042254
Vifa6g00880 1190 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 79 244 IPR030387 -
Vifa6g00880 1190 FunFam BMS1 ribosome biogenesis factor 82 244 - -
Vifa6g00880 1190 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 703 1024 IPR007034 -
Vifa6g00880 1190 Gene3D - 82 244 IPR027417 -
Vifa6g00880 1190 SMART aarp2cn2 230 316 IPR012948 GO:0005634|GO:0042254
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 495 544 - -
Vifa6g00880 1190 Coils Coil 1143 1174 - -
Vifa6g00880 1190 SMART DUF663_2 694 1023 IPR007034 -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 1140 1182 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 545 561 - -
Vifa6g00880 1190 MobiDBLite consensus disorder prediction 1089 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00880 Vifa-Chr6 300602700 300610067 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00880 K14569 - gmx:100792176 1672.14