Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00876 ATGAACAAGCCTCCACGAGAAGATGACCGCAACAACACTGTTTCTACTCTCGACTCCAGATTCAGCCAAACCCTACGAAATGTTCAAGGGTTACTCAAAGGTCGTAGCATGCCCGGTAAAATATTGTTGAGCAGAAGGTCAGAGCCATCCGATAACTCTATCTCGAAGGTATCCTCAACATTTTACAAAAGGAGTTTCTCGCAGAATGATGCTGGGACGAGCAATCACCCGTCTGGTGCAGTAGAGGAGGAAGTTCAGAGTACAAGCAAATCAGTCAGTGTTGCTAATGTTAGTAAGTTGAAAATATCAACCTCCCTTGGGGAAAGAGATAACTTGTCCGAAGATATTCGCAAGTATACTATGGGTGCTAGAGCTACTGATTCGGCAAGAGTTACAAAATTTACTAAAGTGCTTTCAGGACCAGTGGTTATATTAGACAAATTGCGGGAATTAGCTTGGAGTGGTGTTCCAGATTATATGCGTCCTAAAGTGTGGAGACTCCTCTTGGGATATGAACCACCTAATTCAGATAGAAAGGAGGGAGTTCTGAGAAGGAAGCGTGGAGAGTATCTTGATTGTATATCTCAGTATTATGATATTCCTGCTTCAGAACGTTCGGATGATGAGGTCACTATGCTTCGCCAGATTGCGGTTGATTGTCCAAGAACTGTACCTGATGTTCCTTTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTCGTTACACCATTTTTAGTTGTTTTTATATCAGAATACTTGGAAGGAGGTATAGATGATTGGTCCATGTCTGATTTATCTTCCGACAAAATCTCTAATATAGAGGCTGACTGCTACGGGTGTTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTTGCTCAACCTGGAATTCAAAGGCTTGTTTTTAAATTGAAGGAACTGGTCAGGAGGATAGATGAGCCTGTTTCACAACATATAGAGGATCAGGGACTTGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGGGAGATACCATTTGAGCTCATCACCCGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTCGTGTATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAGCTACCGAGCTTGGAATTCCAGGAGTTGGTAATGTTCCTTCAACACCTTCCAACTCAGAAGTGGACTCACCAGGACCTTGATATGGTGCTTTCCCGGGCATTTATGTGGCACACCATGTTCAACAACTCTCCAAGTCATTTCTCTAGCTGA 1359 0.4305 MNKPPREDDRNNTVSTLDSRFSQTLRNVQGLLKGRSMPGKILLSRRSEPSDNSISKVSSTFYKRSFSQNDAGTSNHPSGAVEEEVQSTSKSVSVANVSKLKISTSLGERDNLSEDIRKYTMGARATDSARVTKFTKVLSGPVVILDKLRELAWSGVPDYMRPKVWRLLLGYEPPNSDRKEGVLRRKRGEYLDCISQYYDIPASERSDDEVTMLRQIAVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFISEYLEGGIDDWSMSDLSSDKISNIEADCYGCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSQHIEDQGLEFLQFAFRWFNCLLIREIPFELITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLPSLEFQELVMFLQHLPTQKWTHQDLDMVLSRAFMWHTMFNNSPSHFSS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00876 452 Pfam Rab-GTPase-TBC domain 159 403 IPR000195 -
Vifa6g00876 452 FunFam TBC1 domain family, member 22B 186 316 - -
Vifa6g00876 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 136 342 IPR035969 -
Vifa6g00876 452 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 192 316 - -
Vifa6g00876 452 ProSiteProfiles TBC/rab GAP domain profile. 155 382 IPR000195 -
Vifa6g00876 452 FunFam TBC domain containing protein 317 452 - -
Vifa6g00876 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 318 440 IPR035969 -
Vifa6g00876 452 Gene3D - 317 452 - -
Vifa6g00876 452 SMART tbc_4 152 408 IPR000195 -
Vifa6g00876 452 Gene3D - 130 181 - -
Vifa6g00876 452 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 90 423 - -
Vifa6g00876 452 FunFam TBC1 domain family member 129 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00876 Vifa-Chr6 299925964 299930673 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00876 K20360 - gmx:100819281 750.355