Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00871 ATGGTGTATGCTTTGGTTTCACTGCCACGGTCACTGTCACTTCCCTTCTCGGCCGCTCTCACTCCTAAAAAGAAGACAAGATGGGGTTCGCATTCTCAACTTTCTGAAGACAATATGTTCAACAATACACCAGAGCTTGAGGAGAGTGGGCTACCTCCTCTAGTGAGTGCATTAAAAGCCATAGTTGAACAAAATGAAGCTTCTTTTCACTTTCCTGGACATAACAGAGGCCATGCTGCTCCTTCTTCGATTACTCAACTCATTGGAATCAAACCATATGCCCATGATATGGGCTGCATTCCAGCACTTGATACCCTCTTTAATCCCCAAGGACCAATATTAGAAGCACAAAAAGAAGCAGCCAAATTGTTTGGATCATCACAGACATGGTTTCTTGTTGGAGGTACTACTTGTGGGATCCAGGCAGCAATTATGTCAACCTGTTCACCTGGAGATTATCTCATTCTTCCCAGAAACTGTCATTTGTCAGCTATATCTGGCATGGTATTATCTGGTGCAGTGCCAAAGTACATTGTTCCTGACTATAAAAATGATTGGGATATCCCTGGTGGCATCACTCCATTACAGGTATTGAATGCTATCAAGGAACTAGAACTGGAAGGAAAAAAACTAGGAGCTGTTTTCATCACTTCACCTACTTATCATGGTATTTGCAGTAACTTGAGAGAAATATCTGAGTTGTGTCATTCTCGGAAAATTCCTTTAATTGTTGATGAAGCTCATGGTGCACATCTTGGATTTAATTCTGAAATGCCTAGGTCAGCCCTCCAGCAAGGTGCTGATCTAGCTGTACAATCTACTCACAAGGTTCTTTCCTCTCTTAGTCAGTCATCTATGCTGCACATGTCCGGCGACATCGTAGATAAGGACAAAATATCTAGGTGTCTCCGAACTCTCCAACCTACAAGTCCTAGTTTCCTACTTTTGGCATCCCTAGATGCTGCTAGAGCTCAACTTAGTGAAAGCCCTGATGTTATATTCAACCAAGCCGTTGAATTAGCAAATGAAGCAAAGAACTTGCTAAAACGAATCCCTGGAATCTCAGTGCTTGAGCATTCAAGCTTTCCAAATTTTCTGGCTATGGATCCATTGCGGCTTACCGTAGGTTTTTGGGAGCTTGGTTTATCGGGTTATGAAGCAGATAGAATCTTATTAAGGGATTTTGGAATCGTCTGCGAACTTGTTGGGAATAAATCTATCACTTATGTACTAACTCATGGAACTTGTAGGGAGCACGTTGAAAGGCTTGTATTGGGAATAAAGCATCTAGCTGCAACATGTTCTTCCATTCAGCAACCTAAAGACATTGTGCTTACTGGTCATGCACCTTTCAATGATATAATCATGAAGTTGATCCCTAGAGATGCATTCTTTGCAAGTAAAAGAAAAGTTGCAATGAAGGAGAGCATTGGTAAGGTTTCGGGTGAGCTTATATGTCCATACCCTCCAGGCATACCGGTATTGATCCCTGGTGAGGTTATTACAGAGAGAACTGTCGATCATCTACTCCATGTAAGAAGTAAAGGTGCTGATATTGTTGGAGCATCTGATCCCTTACTTTCTTCTATACTTGTATGTGATGGTAATATCTATTAG 1617 0.4168 MVYALVSLPRSLSLPFSAALTPKKKTRWGSHSQLSEDNMFNNTPELEESGLPPLVSALKAIVEQNEASFHFPGHNRGHAAPSSITQLIGIKPYAHDMGCIPALDTLFNPQGPILEAQKEAAKLFGSSQTWFLVGGTTCGIQAAIMSTCSPGDYLILPRNCHLSAISGMVLSGAVPKYIVPDYKNDWDIPGGITPLQVLNAIKELELEGKKLGAVFITSPTYHGICSNLREISELCHSRKIPLIVDEAHGAHLGFNSEMPRSALQQGADLAVQSTHKVLSSLSQSSMLHMSGDIVDKDKISRCLRTLQPTSPSFLLLASLDAARAQLSESPDVIFNQAVELANEAKNLLKRIPGISVLEHSSFPNFLAMDPLRLTVGFWELGLSGYEADRILLRDFGIVCELVGNKSITYVLTHGTCREHVERLVLGIKHLAATCSSIQQPKDIVLTGHAPFNDIIMKLIPRDAFFASKRKVAMKESIGKVSGELICPYPPGIPVLIPGEVITERTVDHLLHVRSKGADIVGASDPLLSSILVCDGNIY 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00871 538 Gene3D Molybdopterin biosynthesis moea protein, domain 2 471 525 - -
Vifa6g00871 538 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 469 511 IPR008286 GO:0003824
Vifa6g00871 538 ProSitePatterns Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 271 285 IPR000310 GO:0003824
Vifa6g00871 538 Gene3D - 52 331 IPR015421 GO:0003824
Vifa6g00871 538 Pfam Orn/Lys/Arg decarboxylase, major domain 52 355 IPR000310 GO:0003824
Vifa6g00871 538 SUPERFAMILY PLP-dependent transferases 52 428 IPR015424 -
Vifa6g00871 538 PANTHER ARGININE DECARBOXYLASE 40 534 - -
Vifa6g00871 538 SUPERFAMILY Ornithine decarboxylase C-terminal domain 390 535 IPR036633 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00871 Vifa-Chr6 299485459 299492531 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00871 - - psat:127101168 823.542