Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00808 ATGGCGCATAGGGTGGATCATGAGTTTACGAGAAACGAGTTTTGCTTGGAGTCTAAATCTACTATTGGAGTTGAATTCGCCACCAGAACTCTTCAGGTAGAGGGAAAGACTGTAAAAGCACAGATATGGGACACAGCGGGTCAGGAGCGGTGGCTGCGTGAATTGAGGGACCATGCGGATTCTAATATAGTGATTATGATGGCTGGAAATAAGTCTGATTTGAACCATCTTAGAGCTGTTTCAGAAGATGACGGTCATGCTTTGGCAGAGAAGGAAGGTCTATCTTTTCTTGAGACATCCGCCTTGGAAGCAACCAACATTGAGAAGGCATTCCAAACCATATTGACAGAGATCTATCATATTGTAAGCAAAAAAGCACTTGCAGCTCAGGAAGCAGCTTCTGGTACCCCACTTCCTGGTCAAGGAACCACAATCAATGTTGCAGATGCCTCTGCCAATACAAAGAGAGGCTGTTGCTCCACTTAA 486 0.4506 MAHRVDHEFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGHALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEAASGTPLPGQGTTINVADASANTKRGCCST 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00808 161 SMART rab_sub_5 5 121 - -
Vifa6g00808 161 SMART ras_sub_4 9 121 - -
Vifa6g00808 161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 124 IPR027417 -
Vifa6g00808 161 PRINTS Transforming protein P21 ras signature 13 29 - -
Vifa6g00808 161 PRINTS Transforming protein P21 ras signature 31 53 - -
Vifa6g00808 161 ProSiteProfiles small GTPase Rab1 family profile. 1 159 - -
Vifa6g00808 161 Gene3D - 51 159 IPR027417 -
Vifa6g00808 161 SMART rho_sub_3 7 117 IPR001806 GO:0003924|GO:0005525
Vifa6g00808 161 Pfam Ras family 50 119 IPR001806 GO:0003924|GO:0005525
Vifa6g00808 161 Gene3D - 6 50 IPR027417 -
Vifa6g00808 161 PANTHER DRAB11-RELATED 7 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00808 Vifa-Chr6 280828594 280830123 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00808 K07904 - gmx:100799021 276.944