Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00807 ATGGCATTTCGGTGTTTCACTAGAAAATCAGAAACACGTCGTTGTTTGGCTTCATTCTTCCTCGGAGATTTCACGTCAAACTCCACGAAAACTATAAACCCTATCAGTGACGTTTCAACTACACTGTCTTTGAGACAAATTGTTTCAGTGTTCGAATACAAAAACGTGTGCGGCGGTTTTCGGGAATATCACGACGGAAGACCAAGGGGTCCTCTTTGGCGGGGAAAGAAGCTCATTGGTAAAGAAGCTCTCTTTGTAATTTCTGGGTTGAAGAGGTTTAAAGACGATGAGGAGAAGCTTCCCAAGTTTATCAAAACTCATGTTTTGAGACTCTTGAAGATGGACTTGATTGCTGTTCTCACTGAACTTGAGCGCCAGCAAGAAGTTTCTCTCGCTCTCACGGTGTTTAAGGTGATGCAAAGGCAGGATTGGTACAAGCCGGATATATTCTTGTACAAGGACTTAATTATTGCGTTGGCAAGGGCTAAAAGAATGGATGACGTGTTGCAATTGTGGGAAAGCATGAAGAAGGAGAATCTGTTCCCTGATTCACAGGCTTATACTGAAGTCATAAGGGGCTTCTTGAGCAGTGGATCTCCGGCAGATGCGATGAACATATATGAAGACATGAAGAGTTCTCCAGATCCACCAGAGGAACTGCCGTTCAGAATTTTGTTGAAAGGCCTCCTGCCGCATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTCGAGGAGATATTTCCTGATTCAAGTATCTATGATCCTCCACAAGAGATATTTGGTGCACGCTGA 792 0.4331 MAFRCFTRKSETRRCLASFFLGDFTSNSTKTINPISDVSTTLSLRQIVSVFEYKNVCGGFREYHDGRPRGPLWRGKKLIGKEALFVISGLKRFKDDEEKLPKFIKTHVLRLLKMDLIAVLTELERQQEVSLALTVFKVMQRQDWYKPDIFLYKDLIIALARAKRMDDVLQLWESMKKENLFPDSQAYTEVIRGFLSSGSPADAMNIYEDMKSSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00807 263 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Vifa6g00807 263 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Vifa6g00807 263 Pfam PPR repeat family 147 194 IPR002885 -
Vifa6g00807 263 Gene3D Tetratricopeptide repeat domain 77 263 IPR011990 GO:0005515
Vifa6g00807 263 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 49 262 IPR044795 -
Vifa6g00807 263 NCBIfam pentatricopeptide repeat 154 183 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00807 Vifa-Chr6 280735246 280736151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00807 118 228 Miscellaneous Gene Families AT4G11690 26.126 1.17e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00807 - - psat:127105833 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00807 6 280735246 280736151 Vifa6g00807 6 280735246 280736151 ECH