Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00716 ATGGCGCCAAAGGGAGAGAAGAAGCCAGCTGAGAAGAAACCCGTCGAAGAGAAGAAGTCCACCATAGCAGAGAAGACTCCCGCTGAGAAGAAGCCTAAGGCCGGAAAGAAGCTGCCTAAGGATGGCGGTGCTGCTGCCAGAGACAAGAAGAAGAAGAGAAACAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCACCCAGACATTGGTATCTCAAGCAAGGCCATGGGTATAATGAACAGTTTCATCAACGACATCTTTGAGAAGCTTGCTGCTGAATCTTCAAGACTTGCAAGGTACAACAAGAAGCCAACCATCACTTCAAGGGAAATTCAGACCGCTGTCAGGCTTGTTCTTCCCGGTGAATTGGCAAAGCATGCCGTCTCTGAGGGCACCAAAGCTGTAACCAAATTTACAAGTTCTTAG 447 0.4787 MAPKGEKKPAEKKPVEEKKSTIAEKTPAEKKPKAGKKLPKDGGAAARDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAAESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00716 148 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00716 148 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00716 148 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00716 148 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00716 148 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00716 148 PANTHER HISTONE H2B 21 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00716 148 SUPERFAMILY Histone-fold 32 148 IPR009072 GO:0046982
Vifa6g00716 148 MobiDBLite consensus disorder prediction 1 48 - -
Vifa6g00716 148 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00716 148 Pfam Core histone H2A/H2B/H3/H4 4 124 IPR007125 GO:0003677
Vifa6g00716 148 Gene3D Histone, subunit A 2 148 IPR009072 GO:0046982
Vifa6g00716 148 SMART h2b3 51 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00716 148 FunFam Histone H2B 2 148 - -
Vifa6g00716 148 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00716 Vifa-Chr6 260998050 260998496 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00716 K11252 - gmx:100817849 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00716 6 260998050 260998496 Vifa6g00716 6 260998050 260998496 ECH