Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00715 ATGGCGCCAAAGGGAGAGAAGAAGCCAGCTGAGAAGAAACCCGTCGAGGAGAAGAAGTCCACCATAGCAGAGAAGACTCCTGCTGAGAAGAAGCCTAAGGCCGGAAAGAAGCTGCCTAAGGATGGCGGTGCTGCTGGCGGAGACAAGAAGAAGAAGAGAAACAAGAAGAGCGTGGAGACATACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCACCCAGACATTGGTATCTCAAGCAAGGCCATGGGTATAATGAACAGTTTCATCAACGACATCTTTGAGAAGCTTGCTGCTGAATCTTCAAGACTTGCAAGGTACAACAAGAAGCCAACCATCACTTCAAGGGAAATTCAGACCGCTGTCAGGCTTGTTCTTCCCGGTGAATTGGCAAAGCATGCCGTCTCTGAGGGCACCAAAGCTGTAACCAAATTTACAAGTTCTTAG 447 0.4787 MAPKGEKKPAEKKPVEEKKSTIAEKTPAEKKPKAGKKLPKDGGAAGGDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAAESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00715 148 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00715 148 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00715 148 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00715 148 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00715 148 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00715 148 PANTHER HISTONE H2B 21 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00715 148 FunFam Histone H2B 2 148 - -
Vifa6g00715 148 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00715 148 SUPERFAMILY Histone-fold 32 148 IPR009072 GO:0046982
Vifa6g00715 148 SMART h2b3 51 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa6g00715 148 MobiDBLite consensus disorder prediction 1 55 - -
Vifa6g00715 148 Pfam Core histone H2A/H2B/H3/H4 4 124 IPR007125 GO:0003677
Vifa6g00715 148 Gene3D Histone, subunit A 23 148 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00715 Vifa-Chr6 260972953 260973399 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00715 K11252 - gmx:100817849 202.986