Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa6g00697 | ATGATGCATCAAAGAACCAAAGCGATTAACCACAATCAATTACGCCGTTATCTTTACGCTAAAAACAACACACAAACCTTATTCCACACTCAAAACCAAACACCAACCTCAAATCTTCGAAATCGCAAACACATTCCTTTCATAACCGAAATCAAACATGTTCAAACCTCAGAACAAGCTTTGTCTCTCTTTCACCATTACACCCAACTTGGTCACAAACACTATTACCCTTCCTACGCTGCATTGCTCTATAAACTCGCTCGTTCTAGAAACTTCCAAGCCGTTGAAACCATACTCAAACACATGAAAGATGCCGATATTCAATGCAATGAGACCCTTTTCATTGCTCTCTTTCAACACTACGGTCCACTGAAAGCCATTGAACTCTTTCGCTCTATGAACCAGTTCAATTGTGTAAGGACATTGCAGTCGTTCAATGCGCTTCTTAATCTTCTCGTTGATGGTTCTATGTTTGATGAGGCTATTCATGCTTTTGATCGATCCTATCAAATGGGTTTTCGTCCCAATACTGTTACGTTTAATATTATGATAAAGGGTTGGTTGGTGAAAGGTGAATGGGAAAAAGCATGTCAGGTGTTTGATGAAATGCTTCACAAGAAAGTGCAACCCAGTGTTGTCACTTATAATAGTCTTATTGGGTTTTTGTCTAGGAAGGGGGATTTGGAGAAAGCTATGACCTTGGTTGAGGATATGAGACGTAAAGGTAAACGTGCGAATGGAGTAACGTACGCGCTTTTGATGGAAGGTTTGTGTTCTGTGGGAAAGTATGAGGAAGCTAACAAGTTGATGTTTGATATGGCGTATCGCGGATGTAAGCCTCAGGTTGTGAATTTTTCTGTTTTGATGAATGATCTCGGTAAGAGAGGAAAGATTGATGAGGCGATGGTTTTGCTCCGGGAGATGAGAAAGAGGCGGCTTAAGCCGGATGTTGTGACGTACAACGTGTTTGTAAATTATCTTTGCAAGGAAGGGAAGACAGCGGAAGCTTACAAAGTGTTAATTGAGATGCAAATTGGCGGTTGTCATCCAAATGCAGCTACGTACAGGATGATGCTTGATGGTTTGTGTCGGAATGGGGATTTTGAGGTAGGGCTGAATGTTTTGAATGCAATGTTGGCGAGTGGACATTTCCCACGATCTGATACATTTAACTGTTTGGTTGTTGGGCTTTTGAAGTCTGGGAATATCGATGGTGGATGCTTTGTTTTGGAAGAAATGGAGAAGAGAAAGGTAGATTTTGATTTGGAGAGCTGGGAAAGTGTGATAAAGTATGCTTGCAGCGAGGATGATAACGGTAGCAGTATGCTTATTAATATACTTTCATCTCTGTCCATCTAA | 1359 | 0.4099 | MMHQRTKAINHNQLRRYLYAKNNTQTLFHTQNQTPTSNLRNRKHIPFITEIKHVQTSEQALSLFHHYTQLGHKHYYPSYAALLYKLARSRNFQAVETILKHMKDADIQCNETLFIALFQHYGPLKAIELFRSMNQFNCVRTLQSFNALLNLLVDGSMFDEAIHAFDRSYQMGFRPNTVTFNIMIKGWLVKGEWEKACQVFDEMLHKKVQPSVVTYNSLIGFLSRKGDLEKAMTLVEDMRRKGKRANGVTYALLMEGLCSVGKYEEANKLMFDMAYRGCKPQVVNFSVLMNDLGKRGKIDEAMVLLREMRKRRLKPDVVTYNVFVNYLCKEGKTAEAYKVLIEMQIGGCHPNAATYRMMLDGLCRNGDFEVGLNVLNAMLASGHFPRSDTFNCLVVGLLKSGNIDGGCFVLEEMEKRKVDFDLESWESVIKYACSEDDNGSSMLINILSSLSI | 452 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa6g00697 | 452 | Gene3D | Tetratricopeptide repeat domain | 7 | 206 | IPR011990 | GO:0005515 | |
| Vifa6g00697 | 452 | Gene3D | Tetratricopeptide repeat domain | 274 | 345 | IPR011990 | GO:0005515 | |
| Vifa6g00697 | 452 | Gene3D | Tetratricopeptide repeat domain | 207 | 273 | IPR011990 | GO:0005515 | |
| Vifa6g00697 | 452 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 211 | 245 | IPR002885 | - | |
| Vifa6g00697 | 452 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 176 | 210 | IPR002885 | - | |
| Vifa6g00697 | 452 | SUPERFAMILY | TPR-like | 60 | 340 | IPR011990 | GO:0005515 | |
| Vifa6g00697 | 452 | Pfam | PPR repeat family | 175 | 219 | IPR002885 | - | |
| Vifa6g00697 | 452 | Pfam | PPR repeat family | 315 | 364 | IPR002885 | - | |
| Vifa6g00697 | 452 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 31 | 331 | - | - | |
| Vifa6g00697 | 452 | Gene3D | Tetratricopeptide repeat domain | 346 | 442 | IPR011990 | GO:0005515 | |
| Vifa6g00697 | 452 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 281 | 315 | IPR002885 | - | |
| Vifa6g00697 | 452 | Pfam | PPR repeat | 389 | 417 | IPR002885 | - | |
| Vifa6g00697 | 452 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 316 | 350 | IPR002885 | - | |
| Vifa6g00697 | 452 | Pfam | Pentatricopeptide repeat domain | 234 | 295 | IPR002885 | - | |
| Vifa6g00697 | 452 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 246 | 280 | IPR002885 | - | |
| Vifa6g00697 | 452 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 141 | 175 | IPR002885 | - | |
| Vifa6g00697 | 452 | NCBIfam | pentatricopeptide repeat | 354 | 385 | IPR002885 | - | |
| Vifa6g00697 | 452 | NCBIfam | pentatricopeptide repeat | 213 | 242 | IPR002885 | - | |
| Vifa6g00697 | 452 | NCBIfam | pentatricopeptide repeat | 318 | 352 | IPR002885 | - | |
| Vifa6g00697 | 452 | NCBIfam | pentatricopeptide repeat | 389 | 418 | IPR002885 | - | |
| Vifa6g00697 | 452 | NCBIfam | pentatricopeptide repeat | 144 | 177 | IPR002885 | - | |
| Vifa6g00697 | 452 | NCBIfam | pentatricopeptide repeat | 178 | 211 | IPR002885 | - | |
| Vifa6g00697 | 452 | NCBIfam | pentatricopeptide repeat | 285 | 317 | IPR002885 | - | |
| Vifa6g00697 | 452 | NCBIfam | pentatricopeptide repeat | 248 | 280 | IPR002885 | - | |
| Vifa6g00697 | 452 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 351 | 385 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa6g00697 | 121 | 447 | Glycosyltransferase | AT1G05670 | 28.571 | 4.65e-44 | 162 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa6g00697 | - | - | psat:127103206 | 802.742 |