Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00686 ATGGAGACAGAAGCTGAAACTGTGCAGCCTCAGGTTGCACCGGTAAGGTCCACTAGGAAGAAAATGACGAAACAGTTGACGGGGAAGCGTGATGATACGCCTTTACATTCTGCGGCGAGAGCCGGAGATATGGCTTCTTTGAAGGGGACGGTGGATGGTGCTGAAGAGGGTAAACTGCGTGAAGTGTTTGCGAAGCAGAATCAAGGTGGAGAAACGGCTCTTTATGTTGCTGCTGAGTATGGTTATGTTGATATGGTTAGAGAGATGATTCAGTATTATGATCTTGCTGATGCTGGAATTAAAGCAAGAAATGGTTTTGATGCACTTCATATTGCTGCTAAACAAGGGGATTTAGATATAGTGAAGATCTTAATGGAGGCTCATTCTGAACTGGCGATGACTGTGGATCCATCCAACACTACAGCCTTACACACCGCTGCAACACAAGGGCACACTGAGATAGTGAAATTTCTATTAGAAACAGGTAGTAGCTTGGCTGCAATTGCTAGAAGTAACGGCAAAACAGCTTTGCATTCTGCTGCAAGAAACGGACATTTGGAGGTCGTCAAAGCGATTCTGGAGAAGGAGCCTGGTGTTGTAACAAGGACTGATAAAAAGGGACAGACCGCCCTTCATATGGCGGTGAAGGGACAGAGCCTTGTGGTAGTAGAGGAGTTGATAAAAGCAGACCCATCAACAATAAACATGGTTGATAATAAGGGCAATACAGCATTGCATATAGCTACCAGGAAGGGTAGAACTCAGATTATTAAGTTGATACTTGGACAGAGTGAAACAGATGGTATGGCAATAAACAAAAGTGGCGAAACAGCATTAGACACAGCTGAGAAAACAGGAAACTCTGAAGTAAAAAGCATTCTAACAGAACACGGTATTCAAAGTGGAAAATCCATAACAAAATCTCAACCAAAAACAGCTGCCAGAGAATTAAAACAAACTGTTAGCGACATAAAGCATGAAGTCCATCACCAACTAGAACACACTCGCCAAACGCGAAAAAGCGTTCAAGGAATCGCAAAACGTCTCAACAAAATGCACACAGAAGGACTCAACAACGCAATAAACTCAACAACCGTCGTTGCAGTTCTCATAGCAACGGTTGCATTCGCCGCTATCTTCACCGTCCCAGGCCAATTCGTGGACGATCCAAAAAAAGTTCCTAAAGGAAAGTCGCTCGGAGAAGCAAACATAGCGCCACAAGCTGCGTTTCTAATCTTCTTTGTGTTCGATTCGTTTGCGCTTTTCATTTCTTTAGCGGTTGTGGTGGTTCAAACTTCAATAGTTGTCATTGAAAGCAAAGCAAAGAAACAAATGATGGCTATTATTAACAAACTAATGTGGCTGGCTTGTGTGCTTATTTCTGTTTCATTTTTGGCACTGTCTTTTGTAGTTGTTGGGAAAAATCAAAGGTGGCTTGCAATTGGAGTAACCATTATTGGAACAACTATTATGGCTACTACATTGGGTACTATGTGTTATTGGGTTATTAGGCATAGAATTGAAGCTTCAAATTTGAGGAGTATACGTAAATCTTCAATGGGAAGCAGGTCAAGGTCATTTTCAGTTTCAGTTGTTATGTCAGATTCTGAGATATTAAACAACGAGCGTACTAAAATGTATGCTATTTAG 1650 0.4194 METEAETVQPQVAPVRSTRKKMTKQLTGKRDDTPLHSAARAGDMASLKGTVDGAEEGKLREVFAKQNQGGETALYVAAEYGYVDMVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDIVKILMEAHSELAMTVDPSNTTALHTAATQGHTEIVKFLLETGSSLAAIARSNGKTALHSAARNGHLEVVKAILEKEPGVVTRTDKKGQTALHMAVKGQSLVVVEELIKADPSTINMVDNKGNTALHIATRKGRTQIIKLILGQSETDGMAINKSGETALDTAEKTGNSEVKSILTEHGIQSGKSITKSQPKTAARELKQTVSDIKHEVHHQLEHTRQTRKSVQGIAKRLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPKKVPKGKSLGEANIAPQAAFLIFFVFDSFALFISLAVVVVQTSIVVIESKAKKQMMAIINKLMWLACVLISVSFLALSFVVVGKNQRWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVVMSDSEILNNERTKMYAI 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00686 549 ProSiteProfiles Ankyrin repeat profile. 240 261 IPR002110 GO:0005515
Vifa6g00686 549 MobiDBLite consensus disorder prediction 1 47 - -
Vifa6g00686 549 Gene3D - 19 130 IPR036770 -
Vifa6g00686 549 Pfam Ankyrin repeats (3 copies) 172 231 IPR002110 GO:0005515
Vifa6g00686 549 Pfam Ankyrin repeats (3 copies) 98 165 IPR002110 GO:0005515
Vifa6g00686 549 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
Vifa6g00686 549 SMART ANK_2a 69 98 IPR002110 GO:0005515
Vifa6g00686 549 SMART ANK_2a 172 202 IPR002110 GO:0005515
Vifa6g00686 549 SMART ANK_2a 274 307 IPR002110 GO:0005515
Vifa6g00686 549 SMART ANK_2a 104 133 IPR002110 GO:0005515
Vifa6g00686 549 SMART ANK_2a 206 236 IPR002110 GO:0005515
Vifa6g00686 549 SMART ANK_2a 240 273 IPR002110 GO:0005515
Vifa6g00686 549 SMART ANK_2a 138 167 IPR002110 GO:0005515
Vifa6g00686 549 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 17 528 - -
Vifa6g00686 549 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Vifa6g00686 549 ProSiteProfiles Ankyrin repeat profile. 138 170 IPR002110 GO:0005515
Vifa6g00686 549 ProSiteProfiles Ankyrin repeat region circular profile. 104 131 - -
Vifa6g00686 549 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g00686 549 SUPERFAMILY Ankyrin repeat 34 299 IPR036770 -
Vifa6g00686 549 ProSiteProfiles Ankyrin repeat region circular profile. 172 195 - -
Vifa6g00686 549 Pfam Domain of unknown function 355 471 IPR026961 -
Vifa6g00686 549 Pfam Ankyrin repeat 241 262 IPR002110 GO:0005515
Vifa6g00686 549 ProSiteProfiles Ankyrin repeat region circular profile. 240 261 - -
Vifa6g00686 549 Gene3D - 131 302 IPR036770 -
Vifa6g00686 549 ProSiteProfiles Ankyrin repeat region circular profile. 138 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00686 Vifa-Chr6 252708070 252710287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00686 1 549 Miscellaneous Gene Families AT1G07710 71.220 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00686 - - gmx:100808971 828.935