Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00685 ATGGACGACGAATTGCTCGAGTTGCAGAGACAGTTCGAGTTCGCTCAACAAGCGAAGTCCAGTATTCGATTATCCGATCGAAACGTCGTTGAATTAGTCCAGAAATTGCAGCAACTTCAAATCATCGATTTCGAGCTTCTTCACACTGCTTCCGGCAAAGAGTACATCACTCTCGATCAACTGAGAAATGAGATGGTGACTGAGGTGAAGAGATTAGGGCGAATTTCTGTGATTGATCTTGCTGATGTTACTGGAGTTGACTTGTACTATGTTGAGAAATTGGCTCAGAGTATTATAACTGATCACGGGGAATTGATGTTGACTCAAGGGGAAATCGTTACGGAATCTTACTGGGATTCGATTGCGGAAGAGATTAACGAGAGGCTTCAAGAATGTAGTCAGATTGCTTTGACGGAACTTGCTGCGCAATTGAATGTTGGTTTGGATTTGATTGCGTCTGTGTTGGAGCCGCGTCTTGGAACTATAGTTAAAGGAAGGCTTGAAGGTGGGCAGTTGTATACTCCTGCCTATGTTGCTCGTGTTAGTGCCATGGTTCGAGGTGCTGCTAGGGGCATTACCGTTCCGACAAATTTGACAGTGTTATGGAGCTCGTTGCAGAATTTACTGCAAGAAATGGATGGAGCCAGTGGTGTGGCTGTTGATGGATCTTTCTTCCAGTCTTTGTTTAATGGACTTGTGAAGGGAGGTGAAATTTCAGGGTCTGTACGTGCTGGAGTGCATTGGACACCAGCTGTATTTGCTGTTGCTCAAAAGGAATCTGTGGATTCATTCTTTTCACAAAATTCTTTTATCAGCTATGACGTTCTGCAAAAACTTGGAATTCCTCAGCCCGTTCAATTCTTGCAGTCCAGATATCCTGAAGGCAAACCTCTTGTTACAACATTTGTTCACCCATCAATGATTGAGATGCTAGATGCTGCTACTGAGGATGCTCTAGAACGTGGTAGCTGGAGTGATTCTCTTTCCTTATTGCCCTCATCTTTTACACCTCAAGATGCATCTAAAATGTTGTTCCTCTGTCAATCTGTACAATTGGCTCTTAAGTCTAACAAAGCACATATATTTGGGGACTTCTATGTATTGAGCAGCAGCTTTATGAAGGACATTTGCGATTGTACGGTGAAAGAATTAGAGACATTAGCTGTTTCAAGGTCTTTGGGCACTGTAAAACCTGGTGATTTACCAATAGCCAATGAAGTAAAAGCAGGGTATGATTCAAGCAGGTTGAGTGTGTCCAGTGAAATGGCAAGTGACAGTGGCTCCAACAAGCATGCTGATAAAGGGCCAAAGAAGAAAAAGGGGAAAGCCACTGGAAATGCATTAGCAAATCAATCTGAAAGTGGTGCTGATAACCAAGAGCATACTTCTACCAAATCTAAGAAAAGCCAGAGAAAGGGTAAGGATACATCTTCACAAACATCAGATTCAAAGCAAGGCTCTAGGAAAGAATCACTTAAAATGAAAGAGGATAATCTCAGTAGTCCCTCAGAAGAATGGATCATGGAGAAGATTACAGCCTTGGTTCCTGATTTTGAAGAACAAGGTATTGATGATCCTGAAACAATTCTTAGGCCTTTGGCTAACAAGTTAAGGCCCACAATAATCAATACTTGGATGGAGAAAAGGAAGGCATTGTTTAAAGACAATGCAGAAAGAATGAAACAATTGCTTGATAATTTGCAGAAAAAACTCGATGAGTCTTTCTTAAACATGCAACTGTATGAAAAAGCCTTAGAATTGTTTGAAGATGATCAATCAACTTCTGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTTGACATGCTTCTTCATGACTTGGATGAGCACAACAAATTAAAGAACGGAGTAGAAGTGCAGGAATCTCCAAATTCTGAGTCTATTTCGTTTAGTCCTGGAGATAGAGCTGCAATTTCCAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAGCATTGGAAGGAAAGAGGGTGGAAACATTCATGTCTTCATTCAGAGCTGTGACAGAAGAGAGCGGGCTGCCTTTGAAAAAGCTAGACAAGAAACTAGAAAGGACACTTCTACATTCATATCGTAAGGAATTGACATCTCAAGTTTCGGCTGAGACTGACCCTGTATCACTTCTGCCGAAAGTCGTGTCTTTACTCTATGTCCAGGTTTACCATAAAGCTCTACAAGCCCCTGGAAGGGCCATTTCTGTTGCTATTTCTCAATTGACGGATAAGCTTGACGAGACAGCTTGCAAGATTATAGCTGATTATCAAGCTGCTGCCGTTACTCTTTTGACACTTTCAGCTACTCCTGATGACGAAGACAGTTGTGCATCGAATAGAATTCTGACTACAAGAGAGATTCTGGAGAGCCAAATGCCTGCTCTCAAAAGTTTGGTTTCGGGCGCCTCACGGTCATAA 2457 0.4204 MDDELLELQRQFEFAQQAKSSIRLSDRNVVELVQKLQQLQIIDFELLHTASGKEYITLDQLRNEMVTEVKRLGRISVIDLADVTGVDLYYVEKLAQSIITDHGELMLTQGEIVTESYWDSIAEEINERLQECSQIALTELAAQLNVGLDLIASVLEPRLGTIVKGRLEGGQLYTPAYVARVSAMVRGAARGITVPTNLTVLWSSLQNLLQEMDGASGVAVDGSFFQSLFNGLVKGGEISGSVRAGVHWTPAVFAVAQKESVDSFFSQNSFISYDVLQKLGIPQPVQFLQSRYPEGKPLVTTFVHPSMIEMLDAATEDALERGSWSDSLSLLPSSFTPQDASKMLFLCQSVQLALKSNKAHIFGDFYVLSSSFMKDICDCTVKELETLAVSRSLGTVKPGDLPIANEVKAGYDSSRLSVSSEMASDSGSNKHADKGPKKKKGKATGNALANQSESGADNQEHTSTKSKKSQRKGKDTSSQTSDSKQGSRKESLKMKEDNLSSPSEEWIMEKITALVPDFEEQGIDDPETILRPLANKLRPTIINTWMEKRKALFKDNAERMKQLLDNLQKKLDESFLNMQLYEKALELFEDDQSTSVVLHRHLLRTVAAPMVDMLLHDLDEHNKLKNGVEVQESPNSESISFSPGDRAAISKSFPGALANKALAVVEALEGKRVETFMSSFRAVTEESGLPLKKLDKKLERTLLHSYRKELTSQVSAETDPVSLLPKVVSLLYVQVYHKALQAPGRAISVAISQLTDKLDETACKIIADYQAAAVTLLTLSATPDDEDSCASNRILTTREILESQMPALKSLVSGASRS 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00685 818 MobiDBLite consensus disorder prediction 460 478 - -
Vifa6g00685 818 MobiDBLite consensus disorder prediction 445 459 - -
Vifa6g00685 818 MobiDBLite consensus disorder prediction 486 503 - -
Vifa6g00685 818 MobiDBLite consensus disorder prediction 418 503 - -
Vifa6g00685 818 PANTHER E3 UFM1-PROTEIN LIGASE 1 2 815 IPR018611 GO:0061666|GO:0071569
Vifa6g00685 818 Pfam E3 UFM1-protein ligase 1 4 288 IPR018611 GO:0061666|GO:0071569
Vifa6g00685 818 Coils Coil 550 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00685 Vifa-Chr6 252678853 252687946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00685 1 779 EF-hand Containing Proteins AT3G46220 61.175 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00685 K22755 - gmx:100808087 1268.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00685 6 252678853 252687946 Vifa6g00685 6 252678853 252687946 ECH