Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00684 ATGTCGGGGTTTCTTAATTCTTCTGTGAACGGGTCTGCTTCAAATCTTCCAGATGGTGCTGGACGGTCTTATGCCACATCTTTCTCTAGTCAGTCTGGTGCAGCCTCCCCAATTTTTCATCATACTGGTGCTATTCAAGGGATGCATAATATTCATGGGAGCTTTAATGTTCCAAACATGCCTGGTACTCTCCCACCAAGAAACTCCACACTAAATAATGTTCCGTCTGGGGGTGTTCAACAACAAGCAGGAAGCCTTTCTAGTGGAAGATTTGCATCCAACAATCTCCCTATTGCATTATCACAGCTATCTCATGGAAGTTCCTATGGACATTCAGGAGTCACCAATAGAGGAGGATTAGGAGTATCCCCAATTTCAGGAAATGTAGATCCTCGAATCACCAGTTCTTTGGGAAACATGGTTGGCGGAGGGAATATTGGAAGAACTGGAGGATTGTCTGTTCCCGGTCTTGGTTCTCGTCTAAACTTGAGTGCAAACAGTGGATCTGGTGGTTTAGGCATGCAAGGACAAAATCGATTGATGAATAGTGTGCTTCCACAAGGATCTCCGCAGGTGCTTTCAATGTCAGGAAATTCTTATCCTAGTGCTGGAGGTCCGCATTCCCAAAGCCATGTTCACGCAGTAAATAACTTGAACACTATGAGGATGTTGAATGATGTAAATTCCAATGATAGTTCACCTTTTGACCTCAATGATTTCCCTCAACTGACAAGTCGTCCTGGTTCTGCTGGAGGATCTCAAGGACAGTTGGGTTCCTTGCGGAATCAGGGTCTTGGTGTCAATCCTATCGGTCAACAAAACCATGAATTTAGCATTCAAAATGAAGATTTCCCTGCATTACCAGGATTCAAAGGTGTTAGCGCTGATTATGATATGGATATGCACCAGAAAGAACAACTTCATGACAATGCTATGCCAATGATGCAATCTCAGCATTTCTCTATGGGGAGGTCTGCTGGTTTCAGCTTGGGTGGAACATATTCATCCCATCGTCCCCAACCGCAACAGCATAATCCTTCAGTCAGCAGTGGCAGTGGCTCGTTCTCATCAGTAAATAACCAGGATCTTCTCCATCAACATGGATCAGATATTTTTCCGTCTTCTCGTTCTTCCTATCAGTCACAGACAAATGGACCTCCTGGCATTGGATTAAGGCCTTTAAATTCTTCGAATACAGTTTCTGGTATGGGTTCATCATACGACCAACTCATCCAGCAATATCAACAGCAAAATAATCAATCCCAGTTTCGTCTTCAAATGCCATCTCTAAATCAGTCTTTTAGGGACCAGGGCATGATGTCTATACAAGCTGCACAATCACCAGATCCATATGGTTTGCTTGGCCTGTTAAGTGTAATAAGGATGAACGATCTTGACTTGGCATCTCTTGCTCTTGGAATTGATCTTACTACACTTGGCTTAAATCTTAACTCATCAGAAAATCTTCATAAGACTTTTAAGTCTCCATGGGCAGAAGAATCAGCTAAGGGCGATCCAGAGTTTAATGTGCCACAGTGTTATTATGCCGAACAACCTCCTGCTCTACACCTGGGTTATTTTTCAAAGTTTTCAGTGGAAACATTGTTTTACATATTTTACAGTATGCCCAAAGACAAAGCACAATTATGCGCTGCAATTGAGCTTAACAAAAGAGGTTGGTTTTACCACAAAGAGTATCGACTGTGGTTTACAAGAGCACCCAACATGGAGCCGCTGGTGAAAACAAACACATACGAGAGAGGAACTTATCACTGTTTCGATCCAAGTTCATTTGAAACAGTCCGCAAGGATAATGTTGTAATTCATTATGATATGCTGGAAAAGAGACCTCATCTACCTCAGCATTAA 1869 0.4259 MSGFLNSSVNGSASNLPDGAGRSYATSFSSQSGAASPIFHHTGAIQGMHNIHGSFNVPNMPGTLPPRNSTLNNVPSGGVQQQAGSLSSGRFASNNLPIALSQLSHGSSYGHSGVTNRGGLGVSPISGNVDPRITSSLGNMVGGGNIGRTGGLSVPGLGSRLNLSANSGSGGLGMQGQNRLMNSVLPQGSPQVLSMSGNSYPSAGGPHSQSHVHAVNNLNTMRMLNDVNSNDSSPFDLNDFPQLTSRPGSAGGSQGQLGSLRNQGLGVNPIGQQNHEFSIQNEDFPALPGFKGVSADYDMDMHQKEQLHDNAMPMMQSQHFSMGRSAGFSLGGTYSSHRPQPQQHNPSVSSGSGSFSSVNNQDLLHQHGSDIFPSSRSSYQSQTNGPPGIGLRPLNSSNTVSGMGSSYDQLIQQYQQQNNQSQFRLQMPSLNQSFRDQGMMSIQAAQSPDPYGLLGLLSVIRMNDLDLASLALGIDLTTLGLNLNSSENLHKTFKSPWAEESAKGDPEFNVPQCYYAEQPPALHLGYFSKFSVETLFYIFYSMPKDKAQLCAAIELNKRGWFYHKEYRLWFTRAPNMEPLVKTNTYERGTYHCFDPSSFETVRKDNVVIHYDMLEKRPHLPQH 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00684 622 Pfam NOT2 / NOT3 / NOT5 family 491 613 IPR007282 GO:0006355
Vifa6g00684 622 MobiDBLite consensus disorder prediction 1 27 - -
Vifa6g00684 622 FunFam probable NOT transcription complex subunit VIP2 isoform X1 442 622 - -
Vifa6g00684 622 MobiDBLite consensus disorder prediction 225 269 - -
Vifa6g00684 622 MobiDBLite consensus disorder prediction 323 394 - -
Vifa6g00684 622 Gene3D - 442 622 IPR038635 -
Vifa6g00684 622 PANTHER CCR4 NOT-RELATED 48 616 IPR040168 GO:0030015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00684 Vifa-Chr6 252497341 252506089 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00684 K12605 - gmx:100807026 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00684 6 252497341 252506089 Vifa6g00684 6 252497341 252506089 ECH