Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00666 ATGAGTGATGAAGGAGAAAGGACCTGTCCTCTCTGCGCAGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCTTGTCGATGTGGTTATGAGATCTGTGTCTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGATACAGATGGGCGATGCCCTGCTTGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGACGGCGTCAAAGTGTGAAAGATTGCTGAATGAAATTAATATGGAGAAAAAGGTGAAGAATCAAAAAGCAAAATCTAAATCTGCTGATGGACGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGAAACCTTGTTTACATAGTTGGATTGCCTCTGGATCTGGCAGATGAAGATCTTCTCCAGAAGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCACGGACGGCAGGTGGTGTCATTCAACAGTTTCCTAATGATACTTGCAGTGTATATATTACTTATTTAAAGGAAGAGGAAGCAATTCAGTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAAACCCTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATTCGCCTTGCATCAACCCTGATTGTCTATATCTGCACGAGGTTGGCTCTCAAGAAGATAGCTTTACAAAAGATGAAATAATATCAGCTTACACTAGTAGAGTTCAACAAATCACTGGTGCCACAACTAATATGCAACGGCGGTCGGGGACTGTATTACCTCCTCCTCTGGATGATTGCACAGATAATTCGACAGAAAGGCCCATTATTAAAAGTGCTCCAACTAACTCTGTCTACACAGTGCGAAGTTCGCCTCCAAATGGAATCAATGGGAAACATGTACCTCTTTCCACTAGTACTGCATGGGGTACTCAGGCTACAAGTTGTCTGCCCCCTGCTGGAGGTCTATCAAACCCATCTGTTTTGTCCAAGCCAAAGCCTGATACAGTTAACAGCACACTTGCCTTTTCTACTGCTGTTACGGGAACAATTCAGGCTTCTGCAGCACAGGGTGATGGTTCAAGGAGGCCGCCATCAAGTGATGGGAGTCATAATACATTACCTAGGGTGAAAAGTGAATTGCCAAAACCTATTAAACAATATAATAGCAATGACAGTCTGACCAGTGCAGGTGAAAAAATTTCAGCTTGTCCTGTTTCTCCCGCACCTGTCAATTTGAAGAGTGAGCTGTCTTCTCGACCATTATCACGAGATAATGATAGAGGCAATTGTACTATAGCAAACACATTAAATTCTACTGACATCACTGGACATTCTTTTAACTCTGGTCCTGAGGAAGCAGTGCCTGCTACCAGTGAAGTGATCCGGAATCTGTCCAGTGAGTTCTCCTCAATTAACATTGGTAGAAGTTCCTCAATTGAAAACTATGGTATAACCAAACCTAGTAACCGGCCTACTGATCACGTCTTGTCTAAATCTCCTCAAATTCAAGAAGGATCACAATATGATGTTGACAGATTTAAAGACCCAATAACAACAAATGTGGTTGGTAAAACTTCCACATCAGATAGTGGGATTTTTAGTCTAAAGGAACAATGTGGTGGTATATTGAAGTCTCAATCTCAAGTATTATCAGATACAGCTGATATTGAAGATGATGTAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTTGTCGTTCTTATTTGCCTAAGGCAACAAATTTCCTTAATGTATCAAAACTTTCTAGCCCTTGTCTAATGCCGTATGGCGAACCTTGTACTGCTGGAAATGCTGGTTCTCTATCTTCTGATGATAGAGTTCGGGATGAATCTATTTTACATTCGTCTAGCATGTTATGTAATGGCTATCCTGAGAAATTGATCAGTGGCTCCTCTAATGGTTTGCTTCATGATGAAAGAAACAGACAAAGCATTGGAAGGTTGGTTGGGGATGCTGTTAATACCGGGTGTGATGTGGCAATTGATAAGGGTGAAAGTAATATAATCTCAAATATTCTGTCGATTGATTTTGATCCATGGGATGACTCCCTTACATCACCTCATAATATAGTGAAGCTGTTGACTGACAATACTGATAGCCAGCCCGGTCCTTTAAAAAAATCTAGTTCTTGGAAAGTTCAAAACAATAACCAGTCAAGGTTCTCTTTTGCAAGACAGGAAGAATCTGAAATTCAAACTTTGGATGTGCATCCGTCTTATGCTTTTAGCCAGCAACAGCCCAAGAGCCACACACTCAATCAGAATCTGGCAGAAAGAGACTTTTATATGGAAAAGTTGGGCATTGCAAATGGCTTTCCTTCTAGTAACTTTGAGGAAGCTGAAAATATAAGCAGTGCTCATTCACTTGCTTCTTCCAATAAGCTTTCTGCTATTTCAAGAGCACAAGTTTCAGCTCCGCCAGGTTTTTCAATTCCAAGCAGGCTGCCGCCTCCTGGTTTTTCTTCCCATGAGAGATCAGAGCAGACTTTTGACTCCCTATCTGGGAATTCCTTACTTGATCATTCTTCTTTTTTGAGAAATTCACATCAAACGCTCTCAGCTGGAAATATTGGTGGCACAGGCGACATTGAATTTATGGATCCAGCTATTTTGGCAGTTGTTGGCAAGGGGAGACTTCAAGCCAGACTACAGTTCCTGATGCAAAGATCTCTCTCACAGCAGCAAAACCATAGATTTCCTGAAATTGGGAATACTTATTCTCATCTTGGTGATTCATATGGTATTTCTTCTAGGTTAGATCAATCTCAAGTCAGTAACTTAGCCCCTTTCCCTCAGCTGTCTATGCAGCAGTCTACAAATGCAGTCTTTTCTAATGGCCAATGGAATGGGTGGAATGAGATGCAGAGTGGGAATGGTGTGGGGGTTGCCGAACTTTTGCGGAACGAAAGACTTGGATTTAACAAGTTTTACCCAGGATATGATGATTCAAAGTATCGGATGCCAAATTCTGGGGATATCTACAACAGAACTTTTGGCATGTGA 3024 0.4147 MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGTASKCERLLNEINMEKKVKNQKAKSKSADGRKQLSSVRVIQRNLVYIVGLPLDLADEDLLQKREYFGQYGKVLKVSMSRTAGGVIQQFPNDTCSVYITYLKEEEAIQCIQNVHGFVLEGKPLRACFGTTKYCHAWLRNSPCINPDCLYLHEVGSQEDSFTKDEIISAYTSRVQQITGATTNMQRRSGTVLPPPLDDCTDNSTERPIIKSAPTNSVYTVRSSPPNGINGKHVPLSTSTAWGTQATSCLPPAGGLSNPSVLSKPKPDTVNSTLAFSTAVTGTIQASAAQGDGSRRPPSSDGSHNTLPRVKSELPKPIKQYNSNDSLTSAGEKISACPVSPAPVNLKSELSSRPLSRDNDRGNCTIANTLNSTDITGHSFNSGPEEAVPATSEVIRNLSSEFSSINIGRSSSIENYGITKPSNRPTDHVLSKSPQIQEGSQYDVDRFKDPITTNVVGKTSTSDSGIFSLKEQCGGILKSQSQVLSDTADIEDDVTSFDNQRLKDPEVCRSYLPKATNFLNVSKLSSPCLMPYGEPCTAGNAGSLSSDDRVRDESILHSSSMLCNGYPEKLISGSSNGLLHDERNRQSIGRLVGDAVNTGCDVAIDKGESNIISNILSIDFDPWDDSLTSPHNIVKLLTDNTDSQPGPLKKSSSWKVQNNNQSRFSFARQEESEIQTLDVHPSYAFSQQQPKSHTLNQNLAERDFYMEKLGIANGFPSSNFEEAENISSAHSLASSNKLSAISRAQVSAPPGFSIPSRLPPPGFSSHERSEQTFDSLSGNSLLDHSSFLRNSHQTLSAGNIGGTGDIEFMDPAILAVVGKGRLQARLQFLMQRSLSQQQNHRFPEIGNTYSHLGDSYGISSRLDQSQVSNLAPFPQLSMQQSTNAVFSNGQWNGWNEMQSGNGVGVAELLRNERLGFNKFYPGYDDSKYRMPNSGDIYNRTFGM 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00666 1007 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 111 192 - -
Vifa6g00666 1007 CDD RRM_CNOT4 105 204 IPR034261 -
Vifa6g00666 1007 MobiDBLite consensus disorder prediction 251 273 - -
Vifa6g00666 1007 SUPERFAMILY RING/U-box 3 66 - -
Vifa6g00666 1007 MobiDBLite consensus disorder prediction 814 840 - -
Vifa6g00666 1007 MobiDBLite consensus disorder prediction 349 371 - -
Vifa6g00666 1007 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Vifa6g00666 1007 MobiDBLite consensus disorder prediction 349 427 - -
Vifa6g00666 1007 MobiDBLite consensus disorder prediction 381 397 - -
Vifa6g00666 1007 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1001 IPR039780 GO:0004842|GO:0030014
Vifa6g00666 1007 MobiDBLite consensus disorder prediction 409 427 - -
Vifa6g00666 1007 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Vifa6g00666 1007 SMART rrm2_1 111 192 IPR003954 GO:0003676
Vifa6g00666 1007 CDD mRING-HC-C4C4_CNOT4 8 58 IPR039515 -
Vifa6g00666 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Vifa6g00666 1007 Gene3D - 111 192 IPR012677 -
Vifa6g00666 1007 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Vifa6g00666 1007 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Vifa6g00666 1007 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00666 Vifa-Chr6 246321110 246327725 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00666 K10643 - gmx:100813427 1511.12