Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00635 ATGCTTAGAACAAGAATCAACACAGCACGCTCCATTTGTTCATCTCTTTTCAGAACCAATTCTTATAGTTATTCCACTTCCTTCCTCTTCGACGATACACAGATTCAGTTTAAAGAGAGTGTTGCTCAATTTGCTAATGAAAATATTGCTCCTCATGCTTCCAAAATTGACCACACTAACTATTTCCCAAAGGAGGTTAACTTGTGGAAAAGTATGGGAGAATTTAATCTCCATGGGATTACTGCACCAGAGGAGTATGGAGGGCTTGGTCTAGGTTACTTGTATCATTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGGATCGGTTGGTCTTTCTTATGGTGCTCATTCTAACCTATGTATCAATCAACTGGTGAGGAATGGAAGCCATGCTCAGAAAGAGAAATACTTGCCAAAGCTTATCTCGGGGGATCACGTGGGAGCTTTGGCGATGAGTGAACCCAATTCTGGGTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGACGGGGGATATGTACTTAATGGCAACAAGATGTGGTGTACTAATGGGACAGTTGCTCAAACATTAGTTGTCTATGCAAAAACAGACATAACAGCAGGGTCAAAAGGAATAACTGCATTCATCATCCAGAAGGGAATGCCTGGATTCAGTACTGCACAGAAACTGGATAAACTAGGAATGCGAGGAAGTGATACATGCGAGCTTGTCTTTGAGAACTGCTTTGTTCCGGAAGAAAATGTTCTTGGGAAGGAAGGAAAAGGAGTCTATGTCATGATGTCAGGGTTGGATCTGGAAAGGCTTGTTTTATCAGGTGGTCCCCTTGGTATTATGCAGGCATGTCTCGATGTTGTCCTTCCTTATACTCGACAAAGAGAGCAATTCGGTCATCCTATTGGGGAGTTTCAGTTTATACAGGGAAAAGTTGCGGACATGTATACGTCTTTACAGTCCTCAAGGTCTTATGTGTATTCTGTAGCTCGGGACTGTGATAACGGAAAAGTTGACCCGAAGGATTGTGCTGGAGTTATACTTTGTGCAGCTGAAAGAGCAACGCAGGTTGCTTTGCAGGCGATACAATGTTTAGGTGGGAATGGCTATGTGAATGAGTATCCAACCGGTCGTCTCCTTAGAGATGCTAAACTCTATGAGATCGGAGCCGGAACAAGTGAGATCAGAAGAATGATTATTGGACGTGAGCTCTTCAAGGAACAATGA 1227 0.4311 MLRTRINTARSICSSLFRTNSYSYSTSFLFDDTQIQFKESVAQFANENIAPHASKIDHTNYFPKEVNLWKSMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSHAQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGTVAQTLVVYAKTDITAGSKGITAFIIQKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLSGGPLGIMQACLDVVLPYTRQREQFGHPIGEFQFIQGKVADMYTSLQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00635 408 PANTHER ACYL-COA DEHYDROGENASE 28 407 - -
Vifa6g00635 408 PIRSF PIGM 156 408 - -
Vifa6g00635 408 PIRSF PIGM 30 121 - -
Vifa6g00635 408 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 148 261 - -
Vifa6g00635 408 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 254 406 IPR036250 GO:0016627
Vifa6g00635 408 Pfam Acyl-CoA dehydrogenase, middle domain 149 244 IPR006091 GO:0016627
Vifa6g00635 408 CDD IVD 30 406 IPR034183 GO:0003995
Vifa6g00635 408 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 363 382 IPR006089 GO:0003995
Vifa6g00635 408 Pfam Acyl-CoA dehydrogenase, N-terminal domain 32 145 IPR013786 GO:0016627|GO:0050660
Vifa6g00635 408 FunFam isovaleryl-CoA dehydrogenase, mitochondrial 262 406 - -
Vifa6g00635 408 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 24 267 IPR009100 GO:0016627
Vifa6g00635 408 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 23 146 - -
Vifa6g00635 408 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 151 163 IPR006089 GO:0003995
Vifa6g00635 408 Gene3D - 261 404 - -
Vifa6g00635 408 Gene3D - 148 260 IPR046373 GO:0016627
Vifa6g00635 408 Pfam Acyl-CoA dehydrogenase, C-terminal domain 256 404 IPR009075 GO:0016627
Vifa6g00635 408 Gene3D - 20 146 IPR037069 GO:0016627|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00635 Vifa-Chr6 241726722 241729571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00635 5 408 Acyl Lipid Metabolism Gene Families AT3G45300 84.275 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00635 K00253 - gmx:100794259 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00635 6 241726722 241729571 Vifa6g00635 6 241726722 241729571 ECH