Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00623 ATGAGAGCGACAGAGGTTGTGTTGGTTTTGATTTGGTTTCTTGGAGTTTATGCTCCTGCTTCTTTTTGTGCCAATGTTACCTATGATCATAGAGCATTGCTCATTGATGGAAAACGCAGGGTCTTGATTTCCGGTTCTATTCATTACCCTCGTAGTACTCCACAGATGTGGCCAGACCTTATTGGGAAATCTAAAGATGGAGGAATTGATGTCATTGAGACTTATGTTTTCTGGAACTTACACGAACCCGTTCGAGGCCAGTATAATTTTGAAGGTAGGGGGGATTTGGTTGGATTTGTGAAGGCAGTAGCAGCAGCAGGTCTATATGTTCATCTCCGGATCGGTCCATACGCTTGTGCTGAATGGAATTACGGTGGCTTCCCTCTTTGGTTACATTTTATTCCGGGAATTAAGTTCAGAACTGATAATGAACCATTTGAGACAGAAATGCGGCGGTTTACGGCAAAGATTGTGGATTTGATGAAGCAAGAGAAGCTCTATGCATCACAAGGAGGACCTATTATTTTATCTCAGATTGAAAATGAGTATGGAAATATTGATAAAAGCTATGGTCCTGCTGCTAAAACCTACATCAATTGGGCAGCATCGATGGCTACATCTCTTGATACAGGCGTTCCCTGGGTTATGTGCCAGCAAGCAAATGCACCTGATCCAATTATTAATACGTGCAATGGATTTTACTGCGATCAATTCACGCCAAACTCTAACCAGAAACCAAAAATGTGGACTGAGAATTGGACTGGATGGTTTCTTGCATTTGGAGGTGCTGTGCCGTACAGACCTGTAGAAGATCTTGCATTCGCTGTTGCACGTTTTTTTCAGCGAGGTGGAACTTTCCAAAATTACTACATGTACCATGGAGGGACTAACTTTGGCCGAACAACTGGTGGACCTTTCATTTCTACAAGTTATGATTATGATGCACCTATTGATGAGTATGGAATTATTAGACAACCCAAATGGGGGCATCTTAAAGATTTGCATAAGGCCATAAAACTTTGTGAAGAAGCACTTATAGCTACTGATCCAACAATTTCATCCCCTGGTCCAAATCTAGAGACTTCAGTTTACAAGACAGGATCCGTATGTGTGGCCTTCCTTGCTAACACCGGCACGAACGATGCAACGGTTACCTTCAACGGCAATTCATATCACTTGCCTGGATGGTCTGTGAGCATTTTACCAGATTGCAAGAGTGTTGTTCTAAATACTGCAAAGATTAATTCTGCATCTACGATTTCAAGCTTCGCAACTGAATCTGTAAAAGAAGAGGTTGATTCTTTGGGGAGTTCAAGTTCGGGATGGAGTTGGATTAGTGAACCGGTCGGTATTTCAAAGGATGATGCATTCACAAAATCTGGACTTCTTGAACAAATAAACACGACTGCAGATAGAAGTGACTACCTGTGGTATTCATTAAGCATTGATGTTGAAGATACTGCCGGTGCTCAACCTGTTCTTCACATTGAATCCCTTGGTCACGCCCTTCATGCTTTTATAAATGGGAAACTTGCAGGGAGTGGAGTAGGAAACAGCGGAAACGCTAAGGTCAAGGTGGACATCCCTATTACACTTGTATCTGGAAAGAACAAAATTGATCTCCTGAGTTTAACAGTGGGACTACAGAACTATGGAGCTTTTTACGACCTAGTGGGTGCGGGGATCACTGGTCCAGTAACATTGAAAGGTTTGAGAAATGGAAGTACTGTTGATCTCTCCTCACAGCAATGGACATACCAGATTGGTCTTCAAGGTGAAGATTTAGGTTTGTCTAGTGGAAGTGTTGAACAGTGGAATTCACAATCTAACTTACCTACAAATCAACCTTTGACTTGGTACAAGACGAACTTCGTTGCTCCTTCTGGAAGTAACCCAGTTGCAATTGATTTCACGGGGCTGGGAAAAGGAGAAGCCTGGGTGAATGGACAGAGCATTGGACGATACTGGCCAACATACGTCGCTCCAACTTCTGGCTGTACTGACTCATGCAATTATAGAGGATCCTATTCTTCATCGAAATGTCTCAAGAACTGTGGAAAACCATCACAAACATTATATCATGTACCGAGGTCGTGGTTGCGATCAGACAGCAACATTCTTGTATTGTTCGAGGAAAAGGGAGGAGACCCTACAAAAATATCTTTTACTACAAAACAGATAGAAAGTGTGTGTTCACATGTATCTGAATCTCATCCTCCACCTATAGACACATGGAATTCGGCTACAAAATCAGGAAGAAAGGTTGGTCCCGTACTGTCATTGGAGTGCCCTTATCCTAATCAGGTGATCTCTTCTATTAAATTTGCAAGCTTTGGAACTCCTCATGGAACATGCGGAAACTTCAACCACGGACTCTGCAGCAGCAATAGGGCTCTATCCATTGTGCAGAAGACCTGCATTGGATCAAGCAGTTGTAATATCGGAGTATCAAATAATACATTTGGAAATCCATGCCGAGGAGTAACAAAGAGTTTAGCTGTTGAAGCTTCTTGTACATAG 2520 0.4242 MRATEVVLVLIWFLGVYAPASFCANVTYDHRALLIDGKRRVLISGSIHYPRSTPQMWPDLIGKSKDGGIDVIETYVFWNLHEPVRGQYNFEGRGDLVGFVKAVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIKFRTDNEPFETEMRRFTAKIVDLMKQEKLYASQGGPIILSQIENEYGNIDKSYGPAAKTYINWAASMATSLDTGVPWVMCQQANAPDPIINTCNGFYCDQFTPNSNQKPKMWTENWTGWFLAFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFISTSYDYDAPIDEYGIIRQPKWGHLKDLHKAIKLCEEALIATDPTISSPGPNLETSVYKTGSVCVAFLANTGTNDATVTFNGNSYHLPGWSVSILPDCKSVVLNTAKINSASTISSFATESVKEEVDSLGSSSSGWSWISEPVGISKDDAFTKSGLLEQINTTADRSDYLWYSLSIDVEDTAGAQPVLHIESLGHALHAFINGKLAGSGVGNSGNAKVKVDIPITLVSGKNKIDLLSLTVGLQNYGAFYDLVGAGITGPVTLKGLRNGSTVDLSSQQWTYQIGLQGEDLGLSSGSVEQWNSQSNLPTNQPLTWYKTNFVAPSGSNPVAIDFTGLGKGEAWVNGQSIGRYWPTYVAPTSGCTDSCNYRGSYSSSKCLKNCGKPSQTLYHVPRSWLRSDSNILVLFEEKGGDPTKISFTTKQIESVCSHVSESHPPPIDTWNSATKSGRKVGPVLSLECPYPNQVISSIKFASFGTPHGTCGNFNHGLCSSNRALSIVQKTCIGSSSCNIGVSNNTFGNPCRGVTKSLAVEASCT 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00623 839 Gene3D - 579 732 - -
Vifa6g00623 839 FunFam Beta-galactosidase 290 415 - -
Vifa6g00623 839 SUPERFAMILY Galactose-binding domain-like 398 571 IPR008979 -
Vifa6g00623 839 Gene3D - 415 569 - -
Vifa6g00623 839 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 PRINTS Glycosyl hydrolase family 35 signature 642 658 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 PRINTS Glycosyl hydrolase family 35 signature 615 629 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 ProSiteProfiles SUEL-type lectin domain profile. 753 839 IPR000922 GO:0030246
Vifa6g00623 839 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Vifa6g00623 839 SUPERFAMILY Galactose-binding domain-like 583 747 IPR008979 -
Vifa6g00623 839 Gene3D - 749 839 IPR043159 -
Vifa6g00623 839 Gene3D Glycosidases 20 341 - -
Vifa6g00623 839 FunFam Beta-galactosidase 591 731 - -
Vifa6g00623 839 FunFam Beta-galactosidase 21 341 - -
Vifa6g00623 839 SUPERFAMILY (Trans)glycosidases 26 342 IPR017853 -
Vifa6g00623 839 Pfam Galactose binding lectin domain 761 838 IPR000922 GO:0030246
Vifa6g00623 839 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Vifa6g00623 839 CDD Gal_Rha_Lectin_BGal 756 838 - -
Vifa6g00623 839 PANTHER BETA-GALACTOSIDASE RELATED 18 759 IPR001944 GO:0004553|GO:0005975
Vifa6g00623 839 FunFam Beta-galactosidase 416 570 - -
Vifa6g00623 839 Pfam Beta-sandwich domain in beta galactosidase 345 414 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00623 Vifa-Chr6 238163299 238167955 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00623 20 692 Glycoside Hydrolase AT2G28470 75.294 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00623 - - tpra:123919970 1561.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00623 6 238163299 238167955 Vifa6g00623 6 238163299 238167955 ECH