Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00618 ATGGCGGCCAGTGCTGAACTCTCTCCCTCTAAAATCCTAGACACAATCAACGCTCAGGATTCCACCTTAGAACCAACTCTAACAACTCCACAAGACTCCCAAATCAATGAAGCAAAAAACGACGTCGCACCGACCGAGAAACGGAAAAGAGACGACGCCGACGGCAACACCAACACCGATGACAACCGTTCTCTCCACCCGTTGTGGAAGACCAGTCTATGTTCCTACTTCAGGAAACACGCCTCCTGCAGCCACGGCGAGACCTGCCGATACGCGCACAGCGAGGAGGAGCTCCGGCCTCGACCGGACAGCACGTGGGACCCGACGTCTGAGAGAGGTAAGAAGGCACTGAAATCCGTTACCGGCGAGAAAATCGCCGTTAAAGACGGTGTAATGATGACGGAGCTTGTCGACGATATCGATGGCGACGAGGACGACGGTTTTGCATCCAACCAAGCGCTCAGCAAATGTTTAGTGCATTTGCCGATGAAATGGAGCTCTGAGAATTTGAGGAATTTCCTCAATGAGCAGGGTATACCTTTTAAGCACGCCAAGACAAAGAAAGGTATGGCGATTGGTTTCGTTACTTTTGAAGATGAAGAACAACTTAAGAGTTCTTGTAAGGATTTAGAAGGGAAACAAATAGGCAACAAAACGATAGAGGTAGCTGATGTTAATCCTCGATCATTTGAGAAGAAAAGTAACTCTAGTGTTCCTTCAAGTGGGGCATTGGATGATGAACCAAATGATGATAGTTTGGTAATTGATGGTTCCGACTCAAAGAAAAGAAGTTCGCGTGAAGTCGTGACTCCTTTGGCTCATTTGTCCTATGCTGATCAGTTGGAGCAGAAAAAATACTCTCTCATGCAGATTCTCAAAAAGCTTCCTAGAAATGCTCGTAAAGCTTGTCCAAATGGCGTTCCAGTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGCAATCTAGAGGGTATTATTGAATCACCAATTGTAAATGGATATCGTAATAAGTGTGAGTTTTCTATTGGATATTCTATGGAAGGCAAAGCAACAGTGGGCTTCAGCCTTGGAAATTTTAGGGAAGGTGTAACAGCAGTTGAGGAACCAGTTGACTGCCCAAATATTTCTACCATTGCTTGCAAATATGCTGCTATCCTTCAAGAATTTCTACAGCACACTGAATTACCAGTTTGGAACAGATTTAAAAATTGTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGTCAAATGGGAATACTGATGATGCTGAAACTTTTGACGGTATTGCAGAGGTCATGCTTATTGTGCAGGTCTCTACTGCAAGTTTTGATGATGCACAAGTAGCTGCTGAATTTAAGAGGCTTGCTCAGGCATTCATTACAGGAGCTACTTCTCATTGTGCAACTTTACCCCTTACAGCTCTGATTGTTCAGGATCACCAAGGAATATCCAATGTTGCACCATCTGATGCACCGTTGCATTCACTTCCCATAGGAGCTAGTGACCCTGAGAGGGATGAAAGCATTAGTGCTGCAGATGTTAGAATTCATGATTATATCAGCAATCTCCGATTCTCCATATCTCCAACCTCATTTTTTCAGGTTAACACACTTGCTGCCGAGAAGTTATACTCCCTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTTGATATATGCTGTGGGACAGGAGCAATTGGCCTGACATTAGCACATCGTGTTGGAATGGTTATTGGAATTGAAATGAATGCTGCTGCTGTATCTGATGCTCATAAGAATGCGGAGAATAATGGCATAAAAAACTGTAGATTTATCTGTTCAAAGGCAGAGCAAGTTATGGGATCTCTGTTAAAAGAATACCTTAATGTGCCCAAGGAACAAGTTGATGATCCTAATATCTGTGGAACTGTTAATGACATTCCTGAAGACAGTGCCGGCCCAGAGCCCGAAAATGGTAAACAGGCATCTCATTGTTCTGAAAATAACAATTCAGAAGTTGAAAATGAGGGTCCGAAGGAAAGCACTTCTGAAACTGGGAATACTTCCATGAAACAATTTAAAAATGTTGTTGCTATTGTTGATCCTCCCCGTGCTGGACTTCATCCAACTGTGATAAAAGCTTTAAGAACCCATACACGCCTGCGACGACTCGTTTACATATCATGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTCTGTACGCCATCCCCCACAGAAATCGAAAGAGGAAATAAAGACAACAGAGGATGGAGAAGGATGAGTAGTGCTGGTCTAGCTCGGCATAGGGCAAAGTCTATGCCGATTTCAGAGGCCTTCAAACCCATAAAAGCAATGGCTGTTGATCTTTTTCCACATACTCCACATTGTGAATTGGTTATGCTTCTTGAAAGGTAG 2424 0.4381 MAASAELSPSKILDTINAQDSTLEPTLTTPQDSQINEAKNDVAPTEKRKRDDADGNTNTDDNRSLHPLWKTSLCSYFRKHASCSHGETCRYAHSEEELRPRPDSTWDPTSERGKKALKSVTGEKIAVKDGVMMTELVDDIDGDEDDGFASNQALSKCLVHLPMKWSSENLRNFLNEQGIPFKHAKTKKGMAIGFVTFEDEEQLKSSCKDLEGKQIGNKTIEVADVNPRSFEKKSNSSVPSSGALDDEPNDDSLVIDGSDSKKRSSREVVTPLAHLSYADQLEQKKYSLMQILKKLPRNARKACPNGVPVPEWILKSREIGGLPCNLEGIIESPIVNGYRNKCEFSIGYSMEGKATVGFSLGNFREGVTAVEEPVDCPNISTIACKYAAILQEFLQHTELPVWNRFKNCGFWRQLTVREGRSNGNTDDAETFDGIAEVMLIVQVSTASFDDAQVAAEFKRLAQAFITGATSHCATLPLTALIVQDHQGISNVAPSDAPLHSLPIGASDPERDESISAADVRIHDYISNLRFSISPTSFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGAIGLTLAHRVGMVIGIEMNAAAVSDAHKNAENNGIKNCRFICSKAEQVMGSLLKEYLNVPKEQVDDPNICGTVNDIPEDSAGPEPENGKQASHCSENNNSEVENEGPKESTSETGNTSMKQFKNVVAIVDPPRAGLHPTVIKALRTHTRLRRLVYISCNPESLVANAIELCTPSPTEIERGNKDNRGWRRMSSAGLARHRAKSMPISEAFKPIKAMAVDLFPHTPHCELVMLLER 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00618 807 CDD AdoMet_MTases 566 620 - -
Vifa6g00618 807 ProSiteProfiles Zinc finger C3H1-type profile. 68 96 IPR000571 GO:0046872
Vifa6g00618 807 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 220 IPR000504 GO:0003723
Vifa6g00618 807 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 69 95 IPR000571 GO:0046872
Vifa6g00618 807 MobiDBLite consensus disorder prediction 226 262 - -
Vifa6g00618 807 MobiDBLite consensus disorder prediction 1 64 - -
Vifa6g00618 807 Gene3D Vaccinia Virus protein VP39 506 806 IPR029063 -
Vifa6g00618 807 ProSitePatterns RNA methyltransferase trmA family signature 1. 702 734 IPR030390 -
Vifa6g00618 807 MobiDBLite consensus disorder prediction 41 59 - -
Vifa6g00618 807 Pfam Methyltransferase domain 564 622 IPR025714 -
Vifa6g00618 807 SUPERFAMILY CCCH zinc finger 66 100 IPR036855 GO:0046872
Vifa6g00618 807 MobiDBLite consensus disorder prediction 229 243 - -
Vifa6g00618 807 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 268 807 IPR010280 GO:0006396|GO:0008173
Vifa6g00618 807 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 270 807 IPR029063 -
Vifa6g00618 807 Gene3D - 62 101 - -
Vifa6g00618 807 Gene3D - 157 228 IPR012677 -
Vifa6g00618 807 SMART c3hfinal6 68 95 IPR000571 GO:0046872
Vifa6g00618 807 MobiDBLite consensus disorder prediction 640 690 - -
Vifa6g00618 807 MobiDBLite consensus disorder prediction 10 40 - -
Vifa6g00618 807 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 85 807 IPR045850 -
Vifa6g00618 807 MobiDBLite consensus disorder prediction 90 115 - -
Vifa6g00618 807 SUPERFAMILY RNA-binding domain, RBD 160 234 IPR035979 GO:0003676
Vifa6g00618 807 Pfam tRNA (Uracil-5-)-methyltransferase 690 742 IPR010280 GO:0006396|GO:0008173
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00618 Vifa-Chr6 237777956 237783265 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00618 K15332 - tcc:18590864 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00618 6 237777956 237783265 Vifa6g00618 6 237777956 237783265 ECH