Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00612 ATGCTAAATCATAAACGACTCGTCGTTTTACTCTCCCTCGCCACTCTCCTCTTCTTCTCTTCACTATCTCTCACTCTCTGCGAAGACGACGAAGACCTCAGCTTCTTGGAAGAACCCGAAGAAGCCTCCACCACACACCACAACGACGCAAATTACCCGGATCCAGATAATTTCGACGACGAAGATGAAGACGACGGAGGGGGCGATTTCTCCGGCTACGATCCTCACTCGGAGGACGAGTTCAATGATCCAGAGGTGGATGAAAAAGACGTCGTCGTTTTGATTGAGCGAAACTTCACCACCGTTATTGAAAACAACGAATTTGTGCTTGTTGAATTCTACGCGCCGTGGTGCGGTCACTGTCAAGCTCTAGCGCCGGAGTATGCCGCGGCCGCTACTGAGTTGAAGAAAGACGGTGTCGTTTTGGCTAAGGTCGATGCTTCGCAGGAAAATGAATTGGCTCATGAGTATGATGTTCAGGGTTTTCCTACTATATTCTTCTTCGTTGATGGAGTTCATAAACCTTACACTGGCCAAAGAACCAAAGATGCTATAGTGACATGGATTAAGAAGAAGATAGGACCTGGTGTGTACAACATTACTACATTGGATGATGCTGAACGCATATTGACCTCTGAAACTAAAGTTGTTTTGGGCTTCCTTAATTCGTTAGTTGGTGCTGAAAGTGATGAGCTAGCTGCAGCATCAAAACTTGAGGATGGCGTCAATTTTTACCAAACCGTGATTCCTAATGTGGCTAAGCTTTTCCATATTGACCCAAATGTCACGCGCCCTGCCTTGATCTTGCTCAAGAAAGAGGAGGAGAAACTGAACCATTTTGATGGCCAATTTGTTAAAGCTGCAATAGCCAACTTTGTATCCTCCAACAAGCTTCCGCTTGTCACAACTTTTTCTAAGGAAAGTGCCCCAGTGATTTTTGAAAGTCCAATCAAGAAACAGTTGTTGCTGTTTGTGACTAAAAAGGATACAGAGAAGTTCATTCAAGTATTTCAAGAAGCATCAAAGATTTTCAAGGGAAAGCTGATTTTTGTTCATGTGGACATCGATAATGAAGAAGTTGGAAAGCCTGTTGCAGATTATTTTGGTATCTCTGAGAATACTCCCCAAGTACTTGCATTCACAGGAAATGATGATGGTAGAAAATATTTGCTTGATGGTGAGGTGACCGTTGACAATATTAAGGCATTCGGGGAAGATTTCCTTGCAGACAAGCTAAAACCTTTCCTCAAGTCAGATCCAATTCCTGAAAGTAACCACGGTGATGTGAAAATAGTTGTTGGCAATAACTTCGACGAAATTGTCTTGGATGAGTCAAAGGATGTTCTACTTGAGATTTATGCTCCCTGGTGTGGTCATTGCCAAGCCTTGGAACCGACATATAACAAGCTAGCAAAACATCTTCGTAGCATTGATTCTATTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCTAGGGCAAAGTCTGATGGATTCCCCACTATCATCTTCTACCCAGCAGGAAAAAAGAGTTCCGACCCTATTACTGTTGATGCGGATCGTACAGTGGTGGCTTTTTATAAGTTCCTCAAGAAACACGCATCAATCCCATTCCAACTCCAGAAACCAGCCTCACCTTCTAAAACCGACGATAGCGCGAGTTCTGATGTCAAGGCGAGCCAGAGTAGCAGCACAGAAGTGAAGGATGAACTGTAA 1719 0.4369 MLNHKRLVVLLSLATLLFFSSLSLTLCEDDEDLSFLEEPEEASTTHHNDANYPDPDNFDDEDEDDGGGDFSGYDPHSEDEFNDPEVDEKDVVVLIERNFTTVIENNEFVLVEFYAPWCGHCQALAPEYAAAATELKKDGVVLAKVDASQENELAHEYDVQGFPTIFFFVDGVHKPYTGQRTKDAIVTWIKKKIGPGVYNITTLDDAERILTSETKVVLGFLNSLVGAESDELAAASKLEDGVNFYQTVIPNVAKLFHIDPNVTRPALILLKKEEEKLNHFDGQFVKAAIANFVSSNKLPLVTTFSKESAPVIFESPIKKQLLLFVTKKDTEKFIQVFQEASKIFKGKLIFVHVDIDNEEVGKPVADYFGISENTPQVLAFTGNDDGRKYLLDGEVTVDNIKAFGEDFLADKLKPFLKSDPIPESNHGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRSIDSIVIAKMDGTTNEHPRAKSDGFPTIIFYPAGKKSSDPITVDADRTVVAFYKFLKKHASIPFQLQKPASPSKTDDSASSDVKASQSSSTEVKDEL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00612 572 ProSitePatterns Thioredoxin family active site. 449 467 IPR017937 -
Vifa6g00612 572 NCBIfam protein disulfide-isomerase domain 95 192 IPR005788 GO:0003756
Vifa6g00612 572 CDD PDI_b_family 197 296 - -
Vifa6g00612 572 FunFam protein disulfide-isomerase A2 193 297 - -
Vifa6g00612 572 ProSitePatterns Thioredoxin family active site. 110 128 IPR017937 -
Vifa6g00612 572 SUPERFAMILY Thioredoxin-like 197 308 IPR036249 -
Vifa6g00612 572 ProSiteProfiles Thioredoxin domain profile. 415 536 IPR013766 -
Vifa6g00612 572 Gene3D Glutaredoxin 76 196 - -
Vifa6g00612 572 Gene3D Glutaredoxin 421 553 - -
Vifa6g00612 572 CDD PDI_a_family 92 189 - -
Vifa6g00612 572 Gene3D Glutaredoxin 298 420 - -
Vifa6g00612 572 MobiDBLite consensus disorder prediction 39 85 - -
Vifa6g00612 572 NCBIfam protein disulfide-isomerase 89 572 IPR005792 GO:0003756
Vifa6g00612 572 MobiDBLite consensus disorder prediction 541 572 - -
Vifa6g00612 572 MobiDBLite consensus disorder prediction 541 563 - -
Vifa6g00612 572 FunFam Protein disulfide-isomerase 424 537 - -
Vifa6g00612 572 CDD PDI_a_PDI_a'_C 429 531 - -
Vifa6g00612 572 Gene3D Glutaredoxin 197 297 - -
Vifa6g00612 572 SUPERFAMILY Thioredoxin-like 296 426 IPR036249 -
Vifa6g00612 572 Pfam Thioredoxin 429 514 IPR013766 -
Vifa6g00612 572 Pfam Thioredoxin 91 191 IPR013766 -
Vifa6g00612 572 FunFam Protein disulfide-isomerase 298 423 - -
Vifa6g00612 572 PRINTS Thioredoxin family signature 158 169 - -
Vifa6g00612 572 PRINTS Thioredoxin family signature 117 126 - -
Vifa6g00612 572 PRINTS Thioredoxin family signature 109 117 - -
Vifa6g00612 572 FunFam Protein disulfide-isomerase 80 192 - -
Vifa6g00612 572 PANTHER PROTEIN DISULFIDE ISOMERASE 7 569 - -
Vifa6g00612 572 SUPERFAMILY Thioredoxin-like 424 536 IPR036249 -
Vifa6g00612 572 SUPERFAMILY Thioredoxin-like 85 194 IPR036249 -
Vifa6g00612 572 CDD PDI_b'_family 308 408 - -
Vifa6g00612 572 ProSiteProfiles Thioredoxin domain profile. 72 194 IPR013766 -
Vifa6g00612 572 Pfam Thioredoxin-like domain 233 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00612 Vifa-Chr6 237218390 237222795 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00612 K09580 - gmx:100790223 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01392 1 226060237 226063705 Vifa6g00612 6 237218390 237222795 PCT