Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00588 ATGGCATCATCACAATCCGAAGATAGAGAGATAGATATAACAACTTCAATCGAACCCGGTTCAGACATCACCTGGGTAAGAACCGGTTCAGAGCAAGAACTGGATCTCCCTTCAAGCCCCAGTAGTAGCGGTTACGCCGGCGAAGGTGGCGGTAGCACTAGCGCCACCACCGGCTCCTTAATCGAAATTGAACACGAAGAAGAAATTGAACAAGAACAAATGAGGATTCAAAATCAAATCGATGAAATCTCAATCTCCGATTCTAATTCCTCTTGGATTCCCGGAAAACGACACCAGGATGAGGATGATGGTTCTATATCATGGAGAAAAAGGAAGAAGCATTTTTTTATTCTCAGTAATTCTGGAAAACCTATATATTCTAGGTACGGTGATGAACACAAGCTTGCAGGGTTTTCAGCAACTTTGCAAGCAATCGTTTCCTTTGTTGAAAACGGGGGTGATTCTGTCAAATTGGTGAGAGCTGGAAAGCATCAGGTGGTTTTTCTTGTGAAAGGACCAATTTACTTGGTCTGCATTAGCTCCACGGAAGAACCTTACGAGTCGTTAAGAGGGCAGTTGGAATTAATTTATGGCCAGATGCTTGTTATATTAACAAAATCGATAAACAAATGTTTCGAGAGGAATTCGAAGTTCGATATGACGCCCTTACTTGGTGGAACAGACACTGTCTTCTCTTCACTAATCCACTCTTTCAGTTGGAACCCGGCTACATTTCTTCATGCCTATACATGCCTTCCCCTTTCTTATGCAACAAGGCAAGCTGCCGGTGCTGTCTTGCAAGACACTGCTGATTCTGGTGTTTTGTTTGCAACACTGATGTGCAGGCACAAGGTGATCAGTCTTGTTGGTGCTCAGAAAGCTTCCCTTCATCCAGATGATATGCTGCTGCTGGCCAACTTTGTTATGTCATCAGAATCTTTCAGGACGTCAGAATCATTTTCTCCAGTTTGCTTGCCAAGATATAATCCTTCAGCTTTTCTGTATGCTTATATCCATTATTTTGATGATGACACATACTTGATGTTGCTAACCACTAATTCAGATGCATTTTATCATCTTAAAGATTGCCGGCTTCGTATTGAAATGGTCCTTTTGAAGTCAAATGTTCTTAGTGAAGTTCAGAGATCTTTGCTAGATGGAGGAATGCATGTTGAGGATCTACCACCAATACCTCAATCTGGAACTTCTCATTTGGGCCAGCACACGCTTCCATCAGATTCTCCTGAAAGATTTAAGGAAGTTAATCATGTCATTGGGGGTCCTGCTGGCTTGTGGCATTTCATATACCGCAGTATATACCTGGATCAATACGTGTCTTCAGAATTTTCATCATCAATTAGTACTCGTCAACAGCAGAAAAGATTGTGTAGAGCTTACCAGAAACTTTTTACATCAATGCATGATAAAGGAATCGGACCGCACAAAACTCAATTTAGAAGAGATGAAAACTATGTTCTTTTATGTTGGGTGACACAGGATTTTGAGCTTTATGCAGCCTTTGATCCCCTTGCAGACAAGGCCTTGGCAATAAAGACATGCAACCGTGTTTGTCAATGGATAAAAGATGTGGAAAATGAAATATTTTTGCTAGGAGCTAGTCCCTTTTCATGGTGA 1635 0.4153 MASSQSEDREIDITTSIEPGSDITWVRTGSEQELDLPSSPSSSGYAGEGGGSTSATTGSLIEIEHEEEIEQEQMRIQNQIDEISISDSNSSWIPGKRHQDEDDGSISWRKRKKHFFILSNSGKPIYSRYGDEHKLAGFSATLQAIVSFVENGGDSVKLVRAGKHQVVFLVKGPIYLVCISSTEEPYESLRGQLELIYGQMLVILTKSINKCFERNSKFDMTPLLGGTDTVFSSLIHSFSWNPATFLHAYTCLPLSYATRQAAGAVLQDTADSGVLFATLMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRTSESFSPVCLPRYNPSAFLYAYIHYFDDDTYLMLLTTNSDAFYHLKDCRLRIEMVLLKSNVLSEVQRSLLDGGMHVEDLPPIPQSGTSHLGQHTLPSDSPERFKEVNHVIGGPAGLWHFIYRSIYLDQYVSSEFSSSISTRQQQKRLCRAYQKLFTSMHDKGIGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNRVCQWIKDVENEIFLLGASPFSW 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00588 544 Pfam Second Longin domain of FUZ, MON1 and HPS1 274 364 IPR043971 GO:0016192
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 318 341 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 346 372 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 269 282 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 165 179 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 509 522 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 131 151 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 113 130 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 245 266 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 293 309 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 522 542 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 216 228 IPR004353 GO:0006623
Vifa6g00588 544 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 493 507 IPR004353 GO:0006623
Vifa6g00588 544 Pfam Third Longin domain of FUZ, MON1 and HPS1 430 531 IPR043970 GO:0016192
Vifa6g00588 544 Pfam First Longin domain of FUZ, MON1 and HPS1 113 234 IPR043972 GO:0016192
Vifa6g00588 544 Coils Coil 62 82 - -
Vifa6g00588 544 PANTHER SAND PROTEIN-RELATED 25 542 IPR004353 GO:0006623
Vifa6g00588 544 MobiDBLite consensus disorder prediction 1 56 - -
Vifa6g00588 544 MobiDBLite consensus disorder prediction 17 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00588 Vifa-Chr6 229361992 229365544 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00588 K20195 - gmx:100814534 841.647