Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00577 ATGAATTTTAGTCGAAATTCGATGTCGAGAAGTAGAGATTCCTTGGAAGGAATGTTGAATGACTATGTTGCTGGAAAGACAAAAATGAAGCCTCAAAAAGCTGTCACCTCAAGATTTGTTGCAGCACTAACATGTCTTCAATTTTTCTTCGCAGTTTACGCAACGTTTTTATTGTATTACATGGGTCCTTCGATTGATTTAAGAACCAAACCCGATTTCTCAAGAATCGCGCAACATTGGAAGAACCTCATGATCACACCACACATTGTAGGACATTACCAAGAATCATCTTCTTCACTCATCCAAGAAGAGAACACCAATCAACTTCCATCGCTTGTTTGCGAGAATGAGAAAATAGATTTCTTGCAAAAGAAGTCAACTGATGTTCAAATGATTAAGCTAAAGAGAGAGCTTTATGAAGAGGTTTTGAGTTTCCAAAACAAAACCATTGGAACCGAGACGCTTCATGAGCTTATGAGAATGAAATCCAAATGGGATTTAAACGGCCCGAATCCTAAAAAGCCGAAAATCAATGTTTTGTTAAACCACTTCAAGAGAAAAACACTTTGTGCACAGCTTGATTCTTTACTTCAACAGACACTTCCTTTTCATCAAGTTTGGGTGCTCTCGTTCGGGAGTCCAAACGAGGCGTCGTTGAAAAGAATTGTGGAGAGCTATAACGACTCGAGAATCAGTTTCATAAGTTCGAGTTACGATTTTAAGTACTACGGACGGTTTCAAATGGCTTTACAAACAGAAGCTGATCTGGTTTACATTGTGGATGATGATATGATACCTGGAAAGAAAATGTTGGAGATTTTGGCGCATGTTGCGGGGACCGAAAAGTATAAGAATTCAGTTTTGGGAAGTATTGGAAGGATATTGCCATTTAGACAGAAGGATTTTACTTTTCCAAGTTATAGGAAATTTAAGTCTAGAGAAGCTGGTTTGTATTTGCCTGATCCTGCTTATGATATCACTATTGAGAAAATTGTGCAGGTTGATTTTCTTTCAAGCTCTTGGTTTTTATCTGCTGAACTTGTGAAAACACTTTTCATTGAAACACCTTTTACTTTCTCTACTGGTGAAGATCTACACCTCAGCTATCAGCTTCAGAAGTATAGAAATGCAGGCTCATTTGTTCTACCAGTAGATCCAAAAGACAAAGAAACATGGGGTGACAGTGAACACAGGCTAGCCTATGTATCAGAAACAACAGTAATTTTCAAAGACATAGTTCAAGTAAGAGATGATCAATGGTGGAAAGCACTTTCATCAGGATATATAACACAATGGGCAGCAATGTATCCACAAAAAATCGACGCACTCTTTTACGCTCATTCGGTGGACGAAGTAAGAGCACTTTCACCACTTCTCGAAAAATTCAGGTCCACAGTTGGCAAAAAGGCCTACATTGTTGTCTCTGGTGGAGACTTCTGTCCTTGTGAACATGCTGCAGCAGCTCTCAAATGGCCTTTGGTGGTTTGCAAAGAGCGTAGGTTTAAGATCTTTGATTTGGGCGTTGGATCGCTTTCTGGCGTGTCGAACTCCGAGGCACCGGTTATACAAGCTGTGTATTCTAGTTTGAAGGGTTTGATTAGAATTCATAATCCAAGTGTTGTTATAACTGTGGATGATATTGATGTTAATGTGAGAAAGGCTTTGAAGATGGCTTCTGAAGCTAATTCAAATGGTACTACATTGGTTCTTTTGCCTAGAGCTTCTGTTTCTAAAGTTCTTTGGATGGCTGATCTTAGATCAACAGCATTGCCAAATTGGAACAAGATGAGCCTTTCCATCAACATCATAACCCAAAACAGGGTAAACTCCCTATCAAGGCTTCTAAAATCTCTCACCAATGCATACTATCTAGGAGATGAAATTCCAATCACCTTCAACATGGATAGTAAAGTTGATGAATCAACAATAAAACTAGTAGGTTCATTTCATTGGCCACATGGACCCAAAACACTAAGAAGAAGAATCATCCAAGGTGGACTGATAAGAGCAGTAAGTGAAAGTTGGTATCCATCTTCAGATGACAACTTTGGCTTACTCCTTGAAGATGACATTGAAGTCTCACCTTATTACTATCTATGGATCAAATATGCACTCATGAATTACCATTATGACCCTCAAGTATCTCTCCCAGAACTCTCTTCAATCTCTCTCTACACACCAAAGATTGTTGAAGTTGTCAAAGAGAGACCAAAATGGAATGCAACAGACTTCTTCAAACAAATCCATCCAAACACACCTTACCTTCACCAACTCCCATGCAGTTGGGGAGCAGTGTTTTTCCCTAAACACTGGAGAGAGTTTTATGTTTACATGAACATGCGGTTCACCGAAGACGCCAAGAAAAACCCGGTCCAAATACCCAAGTCCCGAACAAACGGCTGGCAAGCTTCATGGAAGAAATTTCTCATTGACATGATGTATTTAAGAGGGTACGTTAGTCTCTATCCAAATTTTCCAAACCAAGCAAGCTTTTCAACTAACCATATGGAACCTGGTGCACATATCAGTGCAAAAGATAATGTTGTCAAGCACAATAAAATGGATTTTGAGGTCCCATTGTTGAAAGATGACTTCAGAAACTTTCTGCCTGGGATGAAAATGCCGTCGCCTTCGAGGTTACCGTCTTTGAATCTTTTCAATCAAGCAGTTTCTCTCAAGGGTCTTAAAGCTGCTGGTGCTAAGTTGGGACAGGATGTGCTCAAATGTGATAATGCTACTGAGATTGTTGCTGTTGATCATGATACTGGTTTACCTCACCATTGCTCTAAATTCTGA 2796 0.3952 MNFSRNSMSRSRDSLEGMLNDYVAGKTKMKPQKAVTSRFVAALTCLQFFFAVYATFLLYYMGPSIDLRTKPDFSRIAQHWKNLMITPHIVGHYQESSSSLIQEENTNQLPSLVCENEKIDFLQKKSTDVQMIKLKRELYEEVLSFQNKTIGTETLHELMRMKSKWDLNGPNPKKPKINVLLNHFKRKTLCAQLDSLLQQTLPFHQVWVLSFGSPNEASLKRIVESYNDSRISFISSSYDFKYYGRFQMALQTEADLVYIVDDDMIPGKKMLEILAHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFKSREAGLYLPDPAYDITIEKIVQVDFLSSSWFLSAELVKTLFIETPFTFSTGEDLHLSYQLQKYRNAGSFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWKALSSGYITQWAAMYPQKIDALFYAHSVDEVRALSPLLEKFRSTVGKKAYIVVSGGDFCPCEHAAAALKWPLVVCKERRFKIFDLGVGSLSGVSNSEAPVIQAVYSSLKGLIRIHNPSVVITVDDIDVNVRKALKMASEANSNGTTLVLLPRASVSKVLWMADLRSTALPNWNKMSLSINIITQNRVNSLSRLLKSLTNAYYLGDEIPITFNMDSKVDESTIKLVGSFHWPHGPKTLRRRIIQGGLIRAVSESWYPSSDDNFGLLLEDDIEVSPYYYLWIKYALMNYHYDPQVSLPELSSISLYTPKIVEVVKERPKWNATDFFKQIHPNTPYLHQLPCSWGAVFFPKHWREFYVYMNMRFTEDAKKNPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPNQASFSTNHMEPGAHISAKDNVVKHNKMDFEVPLLKDDFRNFLPGMKMPSPSRLPSLNLFNQAVSLKGLKAAGAKLGQDVLKCDNATEIVAVDHDTGLPHHCSKF 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00577 931 CDD Glyco_tranf_GTA_type 187 278 - -
Vifa6g00577 931 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 159 385 IPR029044 -
Vifa6g00577 931 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 598 846 IPR029044 -
Vifa6g00577 931 SUPERFAMILY Nucleotide-diphospho-sugar transferases 172 374 IPR029044 -
Vifa6g00577 931 PANTHER OSJNBA0004B13.7 PROTEIN 279 922 - -
Vifa6g00577 931 SUPERFAMILY Nucleotide-diphospho-sugar transferases 595 797 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00577 Vifa-Chr6 224361192 224365343 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00577 - - gmx:100790938 1644.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00577 6 224361192 224365343 Vifa6g00577 6 224361192 224365343 ECH