Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00527 ATGGAATTTTCCAAAACCTCCATGTCTCTTTTGTTGTTCATTTTACTTTCTTGCTCGTATTTAATTTCTCGCATGACACTTCTTCAACGCATTCCATCAACAACAACCTTTCTGCCGAACCAACGAGCAGAAAAGCTCATAAGAAGCCTTAACTTATTTCCAAAGGATCCGGTTAATATAATACGCGATCACTCTTTTGATTTTGTCCCCGGGAAGATTGTAGAGAAGAAGTTCTCCTTTTTTGGTGAAAATCTTGGTCACCATGTTGGATACTATTCGCTTCCTCGTTGCAAAGCCGCGAGGATGTTCTATTTTTTCTTTAAATCACGAAATAGTGCTAATGATGACCCGGTTGTGATATGGTTGGCTGGAGGTCCAGGTTGCAGCAGTGAGCTAGCTATATTTTATGAGAATGGTCCTTTTCAAATTGCCAATAACTTGTCTATTGTATGGAATGACTATGGATGGGATAAGGCATCAAATATTCTTTTTGTTGACCAACCCATTGGGACAGGGTTCAGCTACACATCTGATGATAGTGATATTCCACATGATGAAAGCGCTGTTAGCAATGATTTGTGCGACTTCTTGCAGCAATTTTTCAGTGATCATCCTGAGTTTGTTAAGAACGACTTTTATATTACTGGAGAATCGTATGCTGGACACTATGTTCCAGCTCTTGCTTCCCGAATTCACCAAAGAAATAAAGGCAATAAAGGAATTATTATAAATCTCAAGGGTTTTGCCATTGGGAATGGAATGACCAACCCAATAATTCAATACTCAGCATATACACAATATGCATTTGATATGAAACTGATTACAAAGGAAGATCAAGACAATATCAACAAGTTGCTCCCGCCCTGTGAGGATGCCACAAAAATTTGTGAGAGTGGAGATAGAGAAAGTTGCGTGTTAGCTTTTGATCATTGTGAAGACATAGTCAATAGTATCCTATTCATTGCTGGCGACATTAATTTCTTCGACATCAGAAAGACGTGTGAGGGACCGTTGTGTTATGACTTCTCGGACGTGGAGACACTTCTAAATGAGAAGATAGTTAGAGATGCTTTAGGCGTTGGGGAGTTAAAGTTTGATATATGCAGCAAAGTAGTATATCAGGCTATGCATCAAGATTGGATGAGAAACCTCGAAGTAGATGTTCCAGCACTTCTTGAAGATGGAATTAAGGTTCTTATATATGCCGGAGAATTTGATCTTATTTGCAATTGGCTTGGGAATTCAAATTGGGTTCATGCCATGGAGTGGTCAGGTCAAAACCAGTTTGTAACATCAAAAACAGTTCAATTTTTGGTTGATGATGTAGAAGCAGGATTGTTGAAAAGCTATGGACCTCTTTCTTTTCTTAAGGTGAATGGGGCTGGACATATGGTTCCTATGGATCAACCAAAAGTCGCACTTCAGATGTTGGTAAACTGGATGCAAGGGAACTTGAATGAGACAAGCATTTAA 1473 0.391 MEFSKTSMSLLLFILLSCSYLISRMTLLQRIPSTTTFLPNQRAEKLIRSLNLFPKDPVNIIRDHSFDFVPGKIVEKKFSFFGENLGHHVGYYSLPRCKAARMFYFFFKSRNSANDDPVVIWLAGGPGCSSELAIFYENGPFQIANNLSIVWNDYGWDKASNILFVDQPIGTGFSYTSDDSDIPHDESAVSNDLCDFLQQFFSDHPEFVKNDFYITGESYAGHYVPALASRIHQRNKGNKGIIINLKGFAIGNGMTNPIIQYSAYTQYAFDMKLITKEDQDNINKLLPPCEDATKICESGDRESCVLAFDHCEDIVNSILFIAGDINFFDIRKTCEGPLCYDFSDVETLLNEKIVRDALGVGELKFDICSKVVYQAMHQDWMRNLEVDVPALLEDGIKVLIYAGEFDLICNWLGNSNWVHAMEWSGQNQFVTSKTVQFLVDDVEAGLLKSYGPLSFLKVNGAGHMVPMDQPKVALQMLVNWMQGNLNETSI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00527 490 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vifa6g00527 490 Gene3D alpha/beta hydrolase 74 489 IPR029058 -
Vifa6g00527 490 ProSitePatterns Serine carboxypeptidases, histidine active site. 453 470 IPR033124 GO:0004185
Vifa6g00527 490 Pfam Serine carboxypeptidase 84 483 IPR001563 GO:0004185|GO:0006508
Vifa6g00527 490 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 80 470 IPR001563 GO:0004185|GO:0006508
Vifa6g00527 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 175 IPR001563 GO:0004185|GO:0006508
Vifa6g00527 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 152 164 IPR001563 GO:0004185|GO:0006508
Vifa6g00527 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 200 225 IPR001563 GO:0004185|GO:0006508
Vifa6g00527 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
Vifa6g00527 490 SUPERFAMILY alpha/beta-Hydrolases 81 483 IPR029058 -
Vifa6g00527 490 FunFam Carboxypeptidase 75 490 - -
Vifa6g00527 490 ProSitePatterns Serine carboxypeptidases, serine active site. 214 221 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00527 Vifa-Chr6 206275187 206277823 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00527 K16298 - cave:132163207 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00527 6 206275187 206277823 Vifa6g00527 6 206275187 206277823 ECH