Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00506 ATGCAACTAACAATGGCTTCACAAACTCTCGTCTCACCTTCACCGCTCTCTTCTCACTCTCTTCTCCGAACATCTTTCTCCGGCGTCTCCGTCAAGCTCGCTCCTCAATTCTCAACCCTTACAACTTCCAATTTCAAACCCCTCACCGTCGTTGCTGCCGCCAAGAAAGCCGTCGCTGTCCTTAAGGGAACCTCCGCTGTTGAAGGTGTTGTCACTCTCACTCAAGACGATGGAGGTCCAACAACAGTTAATGTTCGTATCACTGGCCTTACTCCAGGGCTTCATGGTTTTCATCTACATGAGTATGGTGATACCACAAATGGGTGTATCTCAACAGGACCACATTTTAATCCCAACAAGTTGACACATGGTGCTCCTGAAGATGAAACCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCTGAAGGAGTTGCAGAAGCAACAATCGTGGACAATCAGATACCACTCACTGGCCCCAATTCAGTTGTTGGGAGAGCCTTAGTGGTTCACGAGCTTGAAGATGATCTTGGAAAGGGTGGACATGAACTTAGTTTGAGCACTGGAAATGCTGGTGGAAGATTAGCATGTGGTGTGGTTGGCTTGACTCCAGTAAATTAA 624 0.4776 MQLTMASQTLVSPSPLSSHSLLRTSFSGVSVKLAPQFSTLTTSNFKPLTVVAAAKKAVAVLKGTSAVEGVVTLTQDDGGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDETRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPVN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00506 207 Gene3D Superoxide dismutase, copper/zinc binding domain 51 206 IPR036423 GO:0006801|GO:0046872
Vifa6g00506 207 SUPERFAMILY Cu,Zn superoxide dismutase-like 56 203 IPR036423 GO:0006801|GO:0046872
Vifa6g00506 207 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 190 201 IPR018152 -
Vifa6g00506 207 CDD Cu-Zn_Superoxide_Dismutase 63 198 IPR001424 GO:0006801|GO:0046872
Vifa6g00506 207 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 96 106 IPR018152 -
Vifa6g00506 207 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 49 204 IPR024134 GO:0005507
Vifa6g00506 207 Pfam Copper/zinc superoxide dismutase (SODC) 67 201 IPR001424 GO:0006801|GO:0046872
Vifa6g00506 207 PRINTS Cu-Zn-superoxide dismutase family signature 96 118 IPR001424 GO:0006801|GO:0046872
Vifa6g00506 207 PRINTS Cu-Zn-superoxide dismutase family signature 151 173 IPR001424 GO:0006801|GO:0046872
Vifa6g00506 207 PRINTS Cu-Zn-superoxide dismutase family signature 176 202 IPR001424 GO:0006801|GO:0046872
Vifa6g00506 207 PRINTS Cu-Zn-superoxide dismutase family signature 132 141 IPR001424 GO:0006801|GO:0046872
Vifa6g00506 207 FunFam Superoxide dismutase [Cu-Zn], chloroplastic 52 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00506 Vifa-Chr6 195437142 195440823 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00506 K04565 - gmx:100815376 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00506 6 195437142 195440823 Vifa6g00506 6 195437142 195440823 ECH